Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3734
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   2.1  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   2.1  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   2.8  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    27   8.5  

>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 40   HDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYI 156
            H D E ++ ++ + S   RH ++    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 40   HDDLELDSFSKYLQSASLRHFEKAARHENPLIVAAGNYI 156
            H D E ++ ++ + S   RH ++    E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 52   ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 219
            E+D  SK + S        +  A+ + P + A  N I D   R+VN     KHV TDP
Sbjct: 3753 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 3807



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 52   ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 219
            E+D  SK + S        +  A+ + P + A  N I D   R+VN     KHV TDP
Sbjct: 4707 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 4761



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 52   ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 219
            E+D  SK + S        +  A+ + P + A  N I D   R+VN     KHV TDP
Sbjct: 5610 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 5664



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 52   ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 219
            E+D  SK + S        +  A+ + P + A  N I D   R+VN     KHV TDP
Sbjct: 6513 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 6567



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 52   ELDSFSKYLQSASLRH--FEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDP 219
            E+D  SK + S        +  A+ + P + A  N I D   R+VN     KHV TDP
Sbjct: 7416 EIDDISKMIDSTDPERSILDTIAKSDIPALKAQINRIKD---RIVNADASRKHVTTDP 7470


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 163 PVDRMVNRRRRPKHVITDPPDP 228
           PV      RRR +HV++ PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 162 PSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSP 332
           P    G  +TS  A    SS S   +  HHK  SP     S A      ++T  H+P
Sbjct: 40  PRAGAGAGATSSSAA--SSSTSTPSSSSHHKKSSPPHHQKSAAPSAPPRDVTSAHAP 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,876
Number of Sequences: 27780
Number of extensions: 225952
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)