Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3732
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 31 0.55
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 31 0.55
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 31 0.55
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 5.1
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ... 28 6.8
U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protei... 27 9.0
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 27 9.0
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 27 9.0
AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-... 27 9.0
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 495 ESRDGDAVHG 524
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1542 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1601
Query: 495 ESRDGDAVHG 524
S +G++ +G
Sbjct: 1602 GSENGESGNG 1611
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3
Query: 315 AAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGDNKSQH 494
A P A P+ + A I A V A E + + S DG + +NKS+H
Sbjct: 1504 ATGPRCVAVPMRFGATSRAFIPAAAFASVPARVESDEEEEDNSGSESGEDGAASENKSEH 1563
Query: 495 ESRDGDAVHG 524
S +G++ +G
Sbjct: 1564 GSENGESGNG 1573
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 309 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSA 407
+ AAAP A+P AP A ++AP VL +A
Sbjct: 55 VLAAAPTVLAAPAPLLAPPAPLLAPPAPVLAAA 87
>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
protein Y55F3BR.2 protein.
Length = 1594
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 574 CTQPLRTEPSASTRVYSPCTASPSRDSCWDLLSPLCPS 461
C Q P T+ Y C+ S SRD+ D CPS
Sbjct: 1522 CPQGYLCLPHVFTKKYQCCSVSASRDNNTDEAEITCPS 1559
>U64852-4|AAB04967.1| 192|Caenorhabditis elegans Galectin protein
10 protein.
Length = 192
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 324 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 479
P+H++ H + KV A + + V+ HH +Y H +Y + A G GD
Sbjct: 82 PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 450 YSVADGHSGDNKSQHESRDG 509
YS+A G+ GD K H+SR G
Sbjct: 452 YSLATGNWGDQKKAHQSRAG 471
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 450 YSVADGHSGDNKSQHESRDG 509
YS+A G+ GD K H+SR G
Sbjct: 253 YSLATGNWGDQKKAHQSRAG 272
>AB038501-1|BAB11966.1| 192|Caenorhabditis elegans galectin LEC-10
protein.
Length = 192
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 324 PVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADGHSGD 479
P+H++ H + KV A + + V+ HH +Y H +Y + A G GD
Sbjct: 82 PLHHSEHFHLSI---KVHAGYYHISVNGHHLADYPH-RYPYQSVQAIGLKGD 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,581,174
Number of Sequences: 27780
Number of extensions: 116804
Number of successful extensions: 513
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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