Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3728
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    31   0.22 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    30   0.38 
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   4.7  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   8.3  

>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 373 FVFIVSVLSCLILLKIV*KLERIILRRHLQTKRG*CDVASFTYFPVSMILLF 528
           F F  S + CL+LLK   KL   +  +    K   C  ++FT+  VS IL+F
Sbjct: 163 FTFCKSPIFCLVLLKAENKLSSHLGDQQWGWK---CSASAFTFMAVSSILIF 211


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -2

Query: 611 MRFYY*N*ESIYKNSYTIDNGKTNATKENSNIIETGKYVKLATS 480
           +RFYY N    YK  YTID    +A K+  +I+  GKY K  TS
Sbjct: 833 LRFYYGN--KAYK-IYTIDKLVWSAAKQVHHIVSDGKY-KFVTS 872


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 309 GRMYLAQVTSWKALASVVSCKIRFH 383
           GR  L  +T W  +A+++ C + FH
Sbjct: 399 GRRILLLLTVWGMIAALIVCAVAFH 423


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 581 IYKNSYTIDNGKTNATKENSNIIETGKYVK 492
           + K+S TI+N  +N +K+N N++ +    K
Sbjct: 686 LLKHSKTIENVSSNFSKKNRNVVVSESLTK 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,988
Number of Sequences: 5004
Number of extensions: 45349
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)