Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3722
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.6  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 459 THTLIYCYKLP**GCNLTIINFRKFIGIFWTNFRYIYISFFCIV 590
           T T  Y + L      L I      I   W++F Y++   FCI+
Sbjct: 86  TATNYYLFSLAVSDLLLLISGLPPEIYYIWSHFPYVFGEAFCII 129


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 139 IDLSWEIPFKYLFLIF 92
           +DL   IP  Y+FLIF
Sbjct: 171 LDLISSIPLDYIFLIF 186


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 139 IDLSWEIPFKYLFLIF 92
           +DL   IP  Y+FLIF
Sbjct: 171 LDLISSIPLDYIFLIF 186


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 139 IDLSWEIPFKYLFLIF 92
           +DL   IP  Y+FLIF
Sbjct: 171 LDLISSIPLDYIFLIF 186


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 480 YKLP**GCNLTIINFRK 530
           Y L   GC+LTI N RK
Sbjct: 361 YALAPAGCDLTIDNLRK 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,214
Number of Sequences: 438
Number of extensions: 3619
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)