Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3721
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   4.7  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   8.3  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 446 SPSLNGDGAHLGIFMFHFRYALKYCYIVFL*L--KVLSKTEIDICLCMCLQNGCYLYKQL 273
           S + NG+ A    + FHF   L+   ++FL     V+  +E+ I    C++   YL+ Q 
Sbjct: 200 SLTFNGEEAISQWYFFHFNLQLQLLRVIFLSTYSLVVCNSEMAISWFNCMKKTRYLHDQE 259

Query: 272 YV 267
           ++
Sbjct: 260 FM 261


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 85   IVYSMNFHK-IQSNVYLISNSEHRILIQPRPKLI*NCNLWH 204
            I+Y+M F + I++ + +I+    ++L Q R K   N +LWH
Sbjct: 948  IIYTMLFGQYIETRIEVINGQRRQVLTQ-RMKRYWNQDLWH 987


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 274 NCLYK*HPF*RHIHKHISI 330
           +CL++ HPF  H H  +S+
Sbjct: 588 SCLWEIHPFLNHFHPTVSL 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,482
Number of Sequences: 5004
Number of extensions: 46436
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)