Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3721
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...    28   5.7  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 21/86 (24%), Positives = 34/86 (39%)
 Frame = -3

Query: 325 IYVYVCAFKMGAIYISNCTYRPICRVPTI*VYGLCCYEMLNAIDYNFRLTLALVVSKFGV 146
           I+    A+K+  +Y        I  + T+ V  +C Y +LNA DY +R T     +    
Sbjct: 459 IFTSFWAYKIYYVYGFMLLVTIILSIVTVCVTIVCSYFLLNAEDYRWRWTSFACGASTAF 518

Query: 145 LNWK*DIRYFEFYENSWNTLLIAFSF 68
             +   + YF F    +      F F
Sbjct: 519 YVYMYSMYYFFFKTKMYGLFQTVFYF 544


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 455 GVFSPSLNGDGAHLGIFMFHFRYA 384
           GV+ P   GD  HLGIF   FR A
Sbjct: 555 GVWYPMKKGDIPHLGIFSGEFRRA 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,456,921
Number of Sequences: 27780
Number of extensions: 257830
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)