Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3720
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    31   0.55 
06_03_0436 + 20755816-20756025,20756124-20756240,20756942-207571...    28   6.8  

>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 278 D*KKISVKYSNNQIDFVLNLNPLKNGKEGNKLFT 177
           D K  SV+Y  +  + VL+ NP K GKEG K FT
Sbjct: 850 DDKSSSVEYIGDNGELVLS-NPTKQGKEGGKNFT 882


>06_03_0436 +
           20755816-20756025,20756124-20756240,20756942-20757137,
           20757393-20757544,20757653-20757736,20757848-20757925,
           20757958-20758116,20758219-20758251,20759119-20759826,
           20759917-20759998,20760093-20760449,20760586-20760692,
           20760796-20761001,20761480-20761623,20761715-20761800,
           20762120-20762283,20762559-20763119
          Length = 1147

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 263 SVKYSNNQIDFVLNLNPLKNGKEGNKLF 180
           +++Y  +  + +L  NP K GKEG+KLF
Sbjct: 687 TIEYVGDNGELIL-ANPAKRGKEGHKLF 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,951,543
Number of Sequences: 37544
Number of extensions: 175789
Number of successful extensions: 274
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)