Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3720
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.6  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 269 KISVKYSNNQIDFVLNLNPLKN 204
           K + KY N  ID VLN   L N
Sbjct: 23  KYTTKYDNVDIDVVLNTERLLN 44


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 269 KISVKYSNNQIDFVLNLNPLKN 204
           K + KY N  ID VLN   L N
Sbjct: 23  KYTTKYDNVDIDVVLNTERLLN 44


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 133 SCCEGTIAMCVLSVFIICGVSIRHKVLTKRSSK--LIFNIPIWPG 5
           SC    + +C++SV   C ++   K   KR+ +  +++   +W G
Sbjct: 124 SCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLG 168


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 351 YNNRFPFFRTENHNINGGY 295
           YNN +  +   N+N N  Y
Sbjct: 330 YNNNYNNYNNYNNNYNNNY 348


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 351 YNNRFPFFRTENHNINGGYFSKIS*LKKNFS*VLEQ 244
           Y+N   +    N+N N  Y +    L KN+   +EQ
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 351 YNNRFPFFRTENHNINGGYFSKIS*LKKNFS*VLEQ 244
           Y+N   +    N+N N  Y +    L KN+   +EQ
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQ 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,195
Number of Sequences: 438
Number of extensions: 2709
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)