Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3719
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    26   4.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.8  

>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 26  NFFWTSTNNSRPKLAKSAQPFSSFSETNEQQFIFIYIYRFGTSC 157
           NF WT  ++ R K+  + Q   +F+ T  QQ   +  Y   T C
Sbjct: 105 NFIWTEPHSRRIKVKLTVQK-EAFTNTILQQSFQVEFYVNNTQC 147


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 VQLFWRRWSAGRRLAPYRGPPSITNRFL 304
           +Q+++ RW A RR+A     P + +R L
Sbjct: 93  MQIYYYRWKAARRIASREHEPLLQSRSL 120


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  NSRPKLAKSAQPFSSFSETNEQQFIF 127
           N+ P+L +S +P+ S  + + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,465
Number of Sequences: 5004
Number of extensions: 61297
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)