Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3719
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1411 + 26880766-26880911,26881000-26881097,26881207-268812...    29   3.8  
07_01_0110 - 830697-830800,831104-831231,831633-831706,831951-83...    28   6.6  
06_03_1391 + 29837274-29837534,29837912-29838118,29838506-298386...    28   6.6  
02_01_0554 + 4083020-4083854,4083877-4083906,4084843-4084911,408...    28   8.7  
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317           28   8.7  

>08_02_1411 +
           26880766-26880911,26881000-26881097,26881207-26881274,
           26881595-26881683,26881786-26882007,26883056-26883790,
           26883880-26884078,26884319-26884404,26886175-26886536,
           26887290-26887921
          Length = 878

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 233 WRRW-SAGRRLAPYRGPPSITNRFLFSFTA 319
           W  W  AG R   + GPPS++  + F F+A
Sbjct: 491 WALWREAGSRTEMHLGPPSVSPAYCFDFSA 520


>07_01_0110 -
           830697-830800,831104-831231,831633-831706,831951-832034
          Length = 129

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = +1

Query: 187 TFRGE*CEVPWSPIILAALVGGQAPRPLSRPAINNQPVSLFVYGSLHLDIQHSGRVTTEF 366
           TFRG     P++   +  ++ G   R     A  + P      G+LHL  QH G +T   
Sbjct: 66  TFRGIASSWPFASCAIMLIMDGYQKRFKKDCATVSTPNVSRALGNLHLAPQHQGHITLPL 125

Query: 367 LIRM 378
             R+
Sbjct: 126 FCRI 129


>06_03_1391 +
           29837274-29837534,29837912-29838118,29838506-29838622,
           29839446-29839616,29839894-29840124,29840781-29840897
          Length = 367

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -3

Query: 204 LFTPERSIRIRSVLNRQEVPNLYMYIKMNCCSLVSLKLENGWADLANFGLELFVEVQKK 28
           L T ER +R R      +V +LY     +  S+     +NG A LA  GL+L     KK
Sbjct: 172 LKTVERMLRTRQQYMTAQVAHLYPNFAGDAESMAPNGSQNGQAPLAILGLQLSKLTMKK 230


>02_01_0554 +
           4083020-4083854,4083877-4083906,4084843-4084911,
           4085170-4085445,4085601-4085720,4086037-4086044
          Length = 445

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 140 RFGTSCRLRTERIRIERSGVNSVKSRGVQLFWRRWSAGRRLA 265
           R  + CR R E +  E   V   + RG   +WR  +A RR A
Sbjct: 123 RAASECRRRWEALAAEYGVVRRWEVRGAGGYWRMSAAARRKA 164


>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
          Length = 291

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 233 WRRWSAGRRLAPYRGPP 283
           W  W+ GR   PYR PP
Sbjct: 97  WYSWNGGRTAKPYRPPP 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,831
Number of Sequences: 37544
Number of extensions: 396509
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)