Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3719
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    31   1.1  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    31   1.1  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 553 TTHVLNG*ANVYMSAGLPTPVSGALMMTTFVGVRNNNVNFKYP 425
           +T   N  + +Y+S  LP+P  GALM        NN++N   P
Sbjct: 158 STATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTP 200


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 553 TTHVLNG*ANVYMSAGLPTPVSGALMMTTFVGVRNNNVNFKYP 425
           +T   N  + +Y+S  LP+P  GALM        NN++N   P
Sbjct: 158 STATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTP 200


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 553 TTHVLNG*ANVYMSAGLPTPVSGALMMTTFVGVRNNNVNFKYP 425
           +T   N  + +Y+S  LP+P  GALM        NN++N   P
Sbjct: 158 STATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTP 200


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 553 TTHVLNG*ANVYMSAGLPTPVSGALMMTTFVGVRNNNVNFKYP 425
           +T   N  + +Y+S  LP+P  GALM        NN++N   P
Sbjct: 158 STATANFTSQMYLSPTLPSPPRGALMSDCSTPTMNNHINSSTP 200


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 35  WTSTNNSRPKLAKSAQPFSSFSETNEQQFIFIYIYRFGTSCRLRTE 172
           W S N      AK+A+     S  N Q+++F Y    G    LR E
Sbjct: 324 WYSCNRFDDSAAKNARDAQEVSRANLQRYLFYYNRYMGHQQSLRLE 369


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 524 ISLSIKYMCCLHGYQVSSQSDAWF 595
           +S SIK+ C  + Y ++S++  WF
Sbjct: 213 LSTSIKHQCIFYEYYINSETVTWF 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,721
Number of Sequences: 27780
Number of extensions: 340526
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)