Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3718
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0602 + 19183549-19184919                                         32   0.54 
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646     31   1.2  
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           31   1.2  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     29   3.8  
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24...    29   3.8  
02_02_0426 - 10087547-10089054,10090744-10090762                       29   3.8  
04_03_0997 - 21548158-21548377,21548482-21548523,21548646-215487...    28   6.6  
05_04_0190 - 18922555-18923349                                         28   8.8  

>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +3

Query: 297 ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 467
           A+  +AAA P   A  +  A     V +    +L+SA HE     YA+ + D A   ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254

Query: 468 HSGDNKSQHESRDG 509
           H   ++SQ E   G
Sbjct: 255 HHNQDESQREHHHG 268


>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
          Length = 378

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 261 SSQTILRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 437
           SS+  +RH + H+++ +  A P+  A P+  ++P++    P   +  S HHE +  H K
Sbjct: 209 SSRIAIRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265


>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = -2

Query: 583 SSAVYSTLRTEPSASTRVYSPCTASPSRDSCWDL 482
           +S+V    R++PS+ + + SPC ASP RD+ ++L
Sbjct: 389 ASSVGPLFRSQPSSDS-LQSPCKASPCRDASFEL 421


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +3

Query: 282 HDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVL---VSAHHEEEYAH-PKYDFA 449
           H +  +  ++AAAA   YASP       A   A A +V+         + + H    D +
Sbjct: 188 HHRKPSPPFVAAAAAAAYASPDQMECTSAAAAAAAKRVVREDCKPKVSKRFVHADPSDLS 247

Query: 450 YSVADGHSGDNKSQHESRDGDAVHGEY--TLVEADGSVRKVEYTADDH 587
             V DG+      Q  ++D       +  +   A    +KV+ +ADD+
Sbjct: 248 LVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSADDN 295


>06_01_0025 -
           244068-244177,244279-244333,244500-244527,244621-244691,
           244829-244926,245069-245186,245573-245636,245744-245808,
           245893-245928,246255-246311,246422-246691
          Length = 323

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +3

Query: 309 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 467
           +AAA P  YA  +  AAP A +  P      S     EY H  Y F   +  G
Sbjct: 43  LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95


>02_02_0426 - 10087547-10089054,10090744-10090762
          Length = 508

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 595 KPWWSSAVYSTLRTEPSASTRVYSPCTASPSRDSC 491
           +PWW     + +   P A      PC  SPS   C
Sbjct: 437 RPWWEKEAATAVPDPPCARVATPEPCFHSPSYYEC 471


>04_03_0997 -
           21548158-21548377,21548482-21548523,21548646-21548722,
           21548798-21548914,21549149-21549252,21549330-21549399,
           21549489-21549598,21549845-21549932,21550006-21550096,
           21550176-21550268,21550362-21550687,21550922-21551290,
           21551934-21552020
          Length = 597

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 559 RTEPSASTRVYSPCTASPSRDSCWDLLSPLC 467
           RT P A  +  +P   +P++D  W    PLC
Sbjct: 8   RTNPGAGNQTTTPWKKTPAKDRDWRWRIPLC 38


>05_04_0190 - 18922555-18923349
          Length = 264

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 147 WHGAVA--GRDGRCSEKRQP-QLKNIAAPVGDLLHSLPAQRSRLRF*RTWC 4
           W G ++  G  G     + P  +K +    GD+L  +  +  RLR   TWC
Sbjct: 160 WSGTLSRGGGGGGAKRCKHPVAVKRVPVTAGDVLEGVQEEVERLRRAATWC 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,189,958
Number of Sequences: 37544
Number of extensions: 183700
Number of successful extensions: 715
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)