Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3717
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0645 - 19562886-19564484                                         28   9.0  
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487...    28   9.0  
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753...    28   9.0  

>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 498 GDGTTSPKWVSRRFVH 545
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


>04_04_0090 -
           22747049-22747282,22747438-22747847,22748562-22748757,
           22749511-22749583,22749673-22749753,22749855-22749940,
           22750050-22750126,22750313-22750409,22751025-22752020,
           22752882-22752926
          Length = 764

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 433 SYN*LGWSHPRLHNLDIIIPKMATVRLAQNGSPG-GLFISWHSSWAMQLCLWHYSTFSLF 609
           S+  LGW  P     +I    + +   A N S G GL      S+   LC + Y TF+ +
Sbjct: 590 SWGPLGWVIPG----EIFPVDIRSAGQAMNVSIGLGLTFVQTQSFLAMLCRFRYGTFAYY 645

Query: 610 CPWVHLL 630
             WV ++
Sbjct: 646 AAWVAVM 652


>04_04_0078 +
           22573413-22573554,22573637-22573959,22574681-22575313,
           22575383-22575838
          Length = 517

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +1

Query: 433 SYN*LGWSHPRLHNLDIIIPKMATVRLAQNGSPG-GLFISWHSSWAMQLCLWHYSTFSLF 609
           S+  LGW  P     +I    + +   A N S G GL      S+   LC + Y TF+ +
Sbjct: 407 SWGPLGWVIPG----EIFPVDIRSAGQAMNVSIGLGLTFVQTQSFLAMLCRFRYGTFAYY 462

Query: 610 CPWVHLL 630
             WV ++
Sbjct: 463 AAWVAVM 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,699
Number of Sequences: 37544
Number of extensions: 279718
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)