Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3714
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    29   0.40 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.53 
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.0  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   6.6  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   8.7  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   8.7  

>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +2

Query: 47  YSTLLYSTLIFISGKRIAFCTYKSIKFYNIRRLRKIEVVV 166
           YS+ L S++ F SGK++ FC ++ I+    R L+ + V++
Sbjct: 83  YSSPLPSSVEFKSGKQVEFCGFEKIQSKQ-RDLKSLRVII 121


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = -2

Query: 447 YPSNRNALLLHGRNRQGGGTYPRGLIRGPTTSDYANYNFAGLIFIIRCYSFTVEVNRQHL 268
           YP++   + L+ ++ Q   TYP+ L+  P+++         +  ++     T+E   Q++
Sbjct: 404 YPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSAVCEPARNDSIPMMVYSQPVTIEQRIQYV 463

Query: 267 LS 262
           LS
Sbjct: 464 LS 465


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 310 YNKNQTRKIIICVITGGRT 366
           + K+  +K+++C+I+ GRT
Sbjct: 227 WGKDAWKKVVVCIISDGRT 245


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 453 LPYPSNRNALLLHGRNR 403
           LPY  N   L LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 399 GGGTYPRGLIRGPTTSDYANYNFAGLIFIIRCYS 298
           G  +Y   ++  P  SDY NY +A L +I+  +S
Sbjct: 220 GNTSYAFSILVFPA-SDYLNYTYANLPWILGAFS 252


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 193 FVLKRCTGVGIPQAGTNFSNEIRTQQMLTIDFHGE 297
           FVL  C G    + G  ++++IR+     + F+GE
Sbjct: 21  FVLFLCYGKSSRELGVKWNSDIRSWMTSYVGFNGE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,247
Number of Sequences: 5004
Number of extensions: 47242
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)