Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3714
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    32   0.23 
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    32   0.23 
04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286     29   1.6  
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501...    27   6.6  
08_02_1461 - 27299891-27301870                                         27   8.8  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 178 KTSSAFVLKRCTGVGIPQAGTNFSNEIRTQQMLTIDFHGE 297
           K     ++ RCTGV I   G N   +I T   +  DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 232 PAGFQHRCIASTRMHWTSYP 173
           P G QH CI + R HWTS P
Sbjct: 305 PTGDQHACIQALRDHWTSIP 324


>04_04_0194 - 23485978-23486833,23486933-23487062,23487154-23487286
          Length = 372

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -1

Query: 247 KNWYL---PAGFQHRCIASTRMHWTSY---PLGHDDFYFTKTTNIIKFN*LVCTKCNSLT 86
           +NW L    AG Q RC  S R+ WT+Y    L H +F   +   IIK + +V  + + + 
Sbjct: 35  RNWRLIPKNAGLQ-RCGKSCRLRWTNYLRPDLKHGEFTDAEEQTIIKLHSVVGNRWSVIA 93

Query: 85  A 83
           A
Sbjct: 94  A 94


>12_02_0282 -
           16749358-16749445,16749640-16749695,16749965-16750137,
           16750768-16750924,16751279-16751422,16751959-16752134,
           16753024-16753045,16753845-16753937,16754259-16754431,
           16754550-16754760
          Length = 430

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 337 IICVITGGRTSYESARVGPTALPISAV 417
           + C+I  GR +Y +    PTALP   V
Sbjct: 331 LACLINKGREAYITGTTNPTALPAETV 357


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 423 LLHGRNRQGGGTYPRGLIRGPTTS 352
           LL GR R GGG + RGL   P  S
Sbjct: 290 LLRGRRRGGGGGHRRGLFVFPLVS 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,543,510
Number of Sequences: 37544
Number of extensions: 317893
Number of successful extensions: 626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)