Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3712
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389...    37   0.014
04_03_1024 - 21801411-21801725,21801881-21801989,21802200-218023...    29   3.8  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    28   8.7  

>02_05_0183 +
           26537676-26537752,26538481-26538649,26538736-26538910,
           26539008-26539137,26540425-26540558,26540629-26540771,
           26540894-26541092,26541183-26541514
          Length = 452

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = -3

Query: 669 VEEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPGVQCAHQ 544
           + +VN+ +     +  R R+EAY  DD+E   AGP VQCA Q
Sbjct: 412 MHDVNIEEEMRRRQQHR-RQEAYDEDDDEDAGAGPRVQCAQQ 452


>04_03_1024 -
           21801411-21801725,21801881-21801989,21802200-21802375,
           21802489-21802571,21803228-21803279
          Length = 244

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 675 EDVEEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPG 562
           EDV++ +L+D     +     E+ + SDDE+ ++ G G
Sbjct: 12  EDVDDDDLLDDNEDDDDDYSFEDDFESDDEQDLYVGDG 49


>03_02_0693 -
           10441253-10441294,10441404-10441511,10441594-10441677,
           10441765-10443062,10443111-10444804,10444890-10444957,
           10445057-10445186,10445292-10445415,10445551-10445711,
           10446714-10446868
          Length = 1287

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 675 EDVEEVNLMDYFTPSESSRGREEAYASDD 589
           EDVEE N  D +T  E++   EE   SDD
Sbjct: 719 EDVEESNESDAYTLDENTEYIEEQVVSDD 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,001
Number of Sequences: 37544
Number of extensions: 238411
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)