Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3712
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain (... 36 0.039
CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical ... 34 0.12
Z81468-2|CAN99666.1| 950|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF016450-5|AAB65984.2| 280|Caenorhabditis elegans Serpentine re... 29 2.6
AF016450-7|AAB65986.1| 323|Caenorhabditis elegans Serpentine re... 29 4.5
Z99270-2|CAB16469.3| 477|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 28 7.8
>AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 19 protein.
Length = 439
Score = 35.5 bits (78), Expect = 0.039
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = -3
Query: 714 YSAPTSCFGMPTGEDVE------EVNLMDYFTPSESSRGRE-EAYASDDEEHMHA---GP 565
Y+ SCF PT + V EV+LM+Y + SRGR +AY D +E H G
Sbjct: 376 YAVLKSCF--PTSKVVNVTPAAAEVSLMEY-DEKKYSRGRGGDAYNEDSDEEQHGGHHGQ 432
Query: 564 GVQCAHQ 544
GV+C HQ
Sbjct: 433 GVRCQHQ 439
>CU457743-1|CAM36364.1| 692|Caenorhabditis elegans Hypothetical
protein K09E10.1 protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 575 TLALAFNVLINSKICF-MCNSNLQQFIIGSVI*FYST 468
T++ AFN ++ SK+ F + + QF+IG +I FYST
Sbjct: 176 TISFAFNFILPSKVSFNSLLARIWQFLIGMIIYFYST 212
>Z81468-2|CAN99666.1| 950|Caenorhabditis elegans Hypothetical
protein C13B4.1b protein.
Length = 950
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 666 EEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPGVQCA 550
+E L++ F S+ +GR A ++EHM P ++C+
Sbjct: 50 DETLLLELFVNSDEEKGRYVAVGFSNDEHMGNEPVIECS 88
>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
protein C13B4.1a protein.
Length = 1010
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 666 EEVNLMDYFTPSESSRGREEAYASDDEEHMHAGPGVQCA 550
+E L++ F S+ +GR A ++EHM P ++C+
Sbjct: 50 DETLLLELFVNSDEEKGRYVAVGFSNDEHMGNEPVIECS 88
>AF016450-5|AAB65984.2| 280|Caenorhabditis elegans Serpentine
receptor, class t protein68 protein.
Length = 280
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 157 FCTQYITSLFCLFHLLIVPIPFLDFIS 237
F T +ITS+ C++H +++P +D S
Sbjct: 227 FVTVHITSMICVWHSILIPEDLIDMTS 253
>AF016450-7|AAB65986.1| 323|Caenorhabditis elegans Serpentine
receptor, class t protein70 protein.
Length = 323
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 46 NYIKHLHFSAVMF*EQKN*NNVCESSSLSIIIDIYQLFCTQYITSLFCLFH-LLIVPIPF 222
+Y+ +L F A + +KN + S I I + F T YIT++ ++H L I F
Sbjct: 186 SYVAYL-FMAYLIYAKKNLVSCVHSRKNEIAILVQSTFVTTYITAMIFVWHQSLFSKISF 244
Query: 223 LDFISSQ 243
+D S +
Sbjct: 245 IDMESKR 251
>Z99270-2|CAB16469.3| 477|Caenorhabditis elegans Hypothetical
protein Y37A1A.2 protein.
Length = 477
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 479 FYSTYISQIFKKKILC*QGLNCNSCNFILF-IFCNFSDSCFCQMTNKI*INSWIYKNIYL 303
F I ++ K K++ ++C S +LF ++C+ + + T+ + N WI + YL
Sbjct: 309 FIRPMIKRLHKYKLIVPMAVHCTSMAIVLFLVYCSVPNQATQRPTSDL-ANLWITPSRYL 367
Query: 302 T 300
+
Sbjct: 368 S 368
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
protein F54C8.3 protein.
Length = 1027
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 195 KKTKQGCYILCTK*LININNYGQ*RALTYIILIFLFS 85
KK QGC+ L +NIN+ AL YI L+F F+
Sbjct: 285 KKDGQGCHTLLFNVKLNINSSLWDTALRYIRLLFGFN 321
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 195 KKTKQGCYILCTK*LININNYGQ*RALTYIILIFLFS 85
KK QGC+ L +NIN+ AL YI L+F F+
Sbjct: 285 KKDGQGCHTLLFNVKLNINSSLWDTALRYIRLLFGFN 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,187,042
Number of Sequences: 27780
Number of extensions: 262555
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -