Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3710
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.48 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 124 ILSIREVKTLYPFLRKWRGWKGMKFST 204
           IL+ +E+K +  +L KW+ W  +K++T
Sbjct: 249 ILAKKEIKGVPTYLIKWKNW-DLKYNT 274


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +3

Query: 387 FKYCLPL--LIFFYSVVLMKFVIYE 455
           F YC+P+  +I++YS ++   V +E
Sbjct: 218 FSYCIPMILIIYYYSQIVSHVVNHE 242


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 153 VSLFTKMARMEGYEIFHTY 209
           + +   + R  GY +FHTY
Sbjct: 203 IQIVFNLRRRLGYHLFHTY 221


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 544 TSGPAVVEIRLYLIEIVSLYTIMILFS 464
           T GPAVV + +++  I  +  + + +S
Sbjct: 55  TDGPAVVRVNIFVRSISKIDDVTMEYS 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,606
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)