Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3709
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033687-1|AAH33687.1|  304|Homo sapiens mitochondrial methionyl...    30   3.8  
BC016630-1|AAH16630.2|  304|Homo sapiens mitochondrial methionyl...    30   3.8  
AK055688-1|BAB70984.1|  304|Homo sapiens protein ( Homo sapiens ...    30   3.8  
AL139247-5|CAI21683.1|  110|Homo sapiens late cornified envelope...    30   5.0  
AK222491-1|BAD96211.1|  705|Homo sapiens complement component 1,...    29   8.8  
AK222481-1|BAD96201.1|  705|Homo sapiens complement component 1,...    29   8.8  

>BC033687-1|AAH33687.1|  304|Homo sapiens mitochondrial
           methionyl-tRNA formyltransferase protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 287 TAHLMVSGYRRPWTSAMPRAEPSLCLPFNTLHKPRLKK 174
           TA    +GY  PW     +A+PS C  F TL  P  KK
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKK 292


>BC016630-1|AAH16630.2|  304|Homo sapiens mitochondrial
           methionyl-tRNA formyltransferase protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 287 TAHLMVSGYRRPWTSAMPRAEPSLCLPFNTLHKPRLKK 174
           TA    +GY  PW     +A+PS C  F TL  P  KK
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKK 292


>AK055688-1|BAB70984.1|  304|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31126 fis, clone IMR322000838, highly similar to
           METHIONYL-TRNA FORMYLTRANSFERASE, MITOCHONDRIAL
           PRECURSOR (EC ).
          Length = 304

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 287 TAHLMVSGYRRPWTSAMPRAEPSLCLPFNTLHKPRLKK 174
           TA    +GY  PW     +A+PS C  F TL  P  KK
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQC-RFQTLRLPTKKK 292


>AL139247-5|CAI21683.1|  110|Homo sapiens late cornified envelope 2C
           protein.
          Length = 110

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +2

Query: 74  CHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSS 181
           C PQC + C F  VSS  G SS   C PS+  C SS
Sbjct: 32  CPPQCPAPC-FPAVSSCCGPSSGSCCGPSSGGCCSS 66


>AK222491-1|BAD96211.1|  705|Homo sapiens complement component 1, r
           subcomponent variant protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 24/84 (28%), Positives = 32/84 (38%)
 Frame = +2

Query: 68  HCCHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEACGEY*TVGRGLALPLALLK 247
           H C  +C S  L+   S        PR +P  + C  S         V RGL L L  L+
Sbjct: 187 HSCQAECSSE-LYTEASGYISSLEYPRSYPPDLRCNYSIR-------VERGLTLHLKFLE 238

Query: 248 SMGDGNHSPSGGPYARLPTRAIKK 319
                +H     PY +L   A +K
Sbjct: 239 PFDIDDHQQVHCPYDQLQIYANRK 262


>AK222481-1|BAD96201.1|  705|Homo sapiens complement component 1, r
           subcomponent variant protein.
          Length = 705

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 24/84 (28%), Positives = 32/84 (38%)
 Frame = +2

Query: 68  HCCHPQCVSRCLFCHVSSGYGMSSPPRCFPSAMTCPSSNEACGEY*TVGRGLALPLALLK 247
           H C  +C S  L+   S        PR +P  + C  S         V RGL L L  L+
Sbjct: 187 HSCQAECSSE-LYTEASGYISSLEYPRSYPPDLRCNYSIR-------VERGLTLHLKFLE 238

Query: 248 SMGDGNHSPSGGPYARLPTRAIKK 319
                +H     PY +L   A +K
Sbjct: 239 PFDIDDHQQVHCPYDQLQIYANRK 262


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,693,332
Number of Sequences: 237096
Number of extensions: 1761180
Number of successful extensions: 4839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4834
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)