Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3705
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    30   0.31 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   2.9  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   5.1  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +1

Query: 541  KELFKISINEINSMVAVFEFDRSSRNFLLCDL 636
            K L   SIN+I S V VFEF   SRNF    L
Sbjct: 1001 KRLDSFSINDILSQVPVFEFIFLSRNFWTASL 1032


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 55   IRNSNSINFFVASILKEKILLCDNTY--DLTRYIHLKQRI*NKLK 183
            +  +N+ N  +A+   EK   C+N     LTR+ HLKQ + NK K
Sbjct: 1403 VEQANTKNTRLAAAWNEK---CENLKKSSLTRFAHLKQELTNKNK 1444


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 665 INDTRYFTGIKSQSRKFRLDLSNSNTATIELISLMLIL 552
           IND   F G+K  + +F L  SN NT TI  IS +L L
Sbjct: 257 INDCDIFIGLKRDTIEFNL-ASNKNT-TIGTISWLLNL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,206
Number of Sequences: 5004
Number of extensions: 65483
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)