Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3705
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439...    31   1.3  
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988...    28   7.0  

>01_06_1723 -
           39443176-39443505,39443615-39443710,39443834-39443902,
           39444381-39444443,39444521-39444598,39444725-39444838,
           39445727-39445804,39446457-39446522,39446739-39446804,
           39446896-39447003,39447355-39447432,39447951-39448010,
           39448087-39448191,39448407-39448595,39448922-39448985,
           39449244-39449385,39449494-39449654,39449952-39450076,
           39450230-39450300,39450410-39450560,39450713-39450769,
           39451049-39451143,39451331-39451379
          Length = 804

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = -3

Query: 479 YQTNT*TLNQSFTQKFS*YNLNTHII*YNHSVRNLAR-VNSHSIP*VDITVLRCRIKDSL 303
           +QTN   L+ S   +F+   L  H+        N+A+ +N H    VDI+     ++DSL
Sbjct: 505 HQTNAILLSDSNMNEFNNAKLLMHMS--GELAENVAKMINPHFADKVDIS----EVQDSL 558

Query: 302 FHQNRFIGLNTIVFIKLFAMYNL*NP 225
           FH     G+++I+   +  + NL +P
Sbjct: 559 FHARYVNGVSSILSSSIPVLGNLLSP 584


>04_04_0260 +
           23996775-23996865,23997031-23997566,23998407-23998892,
           23998989-23999152,23999220-23999281,23999753-23999907,
           24000625-24000738,24001701-24002233,24002512-24002609,
           24003108-24003398,24003764-24003830,24003905-24003983
          Length = 891

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 247 LCTTCKIQLCREKNKKIVSFHF*VCFKSFASNE 149
           +C  C ++ CR+ N +I+   F VC K +A+N+
Sbjct: 192 ICGLCGME-CRDGNAQILKDGFKVCSKCYANND 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,880
Number of Sequences: 37544
Number of extensions: 319211
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)