Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3703
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 GNILIHNSDDSNFTVNSN 56
           G I+ HNSDDS   + SN
Sbjct: 212 GLIVYHNSDDSFHRLTSN 229


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 GNILIHNSDDSNFTVNSN 56
           G I+ HNSDDS   + SN
Sbjct: 212 GLIVYHNSDDSFHRLTSN 229


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 109 GNILIHNSDDSNFTVNSN 56
           G I+ HNSDDS   + SN
Sbjct: 212 GLIVYHNSDDSFHRLTSN 229


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 112 VGNILIHNSDDSNFTVNSNITRRYCKR 32
           + N  IHN+++  +  N+N     CK+
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 112 VGNILIHNSDDSNFTVNSNITRRYCKR 32
           + N  IHN+++  +  N+N     CK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 112 VGNILIHNSDDSNFTVNSNITRRYCKR 32
           + N  IHN+++  +  N+N     CK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 112 VGNILIHNSDDSNFTVNSNITRRYCKR 32
           + N  IHN+++  +  N+N     CK+
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCKK 111


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 589 LFTFVLINFNYIIIVYFDNNCLRKP 515
           LFT +L+  + +I +   N   RKP
Sbjct: 303 LFTMILVGLSVVITIVILNVHYRKP 327


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 63  FTVKLLSSELCISILPTRSHLYKPQ 137
           F + L+S  +C++++    H   PQ
Sbjct: 313 FAMILVSISICVTVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +3

Query: 63  FTVKLLSSELCISILPTRSHLYKPQ 137
           F + L+S  +C++++    H   PQ
Sbjct: 313 FAMILVSISICVTVVVLNVHFRSPQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,422
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)