Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3702
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    27   3.4  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   4.4  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   7.8  

>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 283 AARSRTVLMWGRNVILLSKVTPKYLTFNSR 194
           +++S  V +W   VILLS +T ++  FNS+
Sbjct: 304 SSQSPKVDIWSAGVILLSFLTKRFPMFNSK 333


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 547 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 660
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 398 YTCIGHDGAYASFVECHLISKGHFTSP 318
           Y  +G DG Y S  EC   S+  FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,180
Number of Sequences: 5004
Number of extensions: 49235
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)