Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3702
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    30   1.5  
01_01_0416 + 3128433-3128573,3128967-3129455                           30   2.0  
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462...    28   6.0  
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924...    28   6.0  
10_05_0101 - 9167383-9167679,9167883-9167961,9168161-9168326,916...    28   8.0  

>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 531 ISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMESSRRRPK-HVISDP 686
           +S Y +S SM  F  +AR   P++ ++ NY+          RRR +  + SDP
Sbjct: 53  VSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANLKRRRIECFLTSDP 105


>01_01_0416 + 3128433-3128573,3128967-3129455
          Length = 209

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -1

Query: 680 RDDVFRATSTAFHSVR----RIGNVVTGGHDERVLVSCRFIEVAHGRRLKILTDGL*VQV 513
           R D+    + AFH +R    R      GG  + V + CR   +A G  LK L + +  Q 
Sbjct: 118 RPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAV-RQA 176

Query: 512 VMEVDVPDEPRGSDGYPAK 456
           + +V  P+   GS  + +K
Sbjct: 177 LAKVASPELVYGSSHFQSK 195


>05_01_0536 -
           4622767-4622865,4623550-4623673,4624571-4624685,
           4624784-4625028,4625081-4625316
          Length = 272

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +3

Query: 447 QSRFCRIAV-GAPWFVRNVDLHDDLDLESISKYLQSASMRHFD--KAARHENPLI--VAA 611
           +++F ++AV GAP ++R VDL      + +   LQ     HF   K    E  L+  V+ 
Sbjct: 118 KAKFVKVAVDGAP-YLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNEEMKLVDAVSG 176

Query: 612 GNYIPDPADR 641
             Y+P   D+
Sbjct: 177 NEYVPTYEDK 186


>04_04_0276 +
           24091360-24091464,24091580-24091713,24091813-24092454,
           24092858-24093044
          Length = 355

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 209 QIFRRHLRQ*DDIPPPHQDGTRPCRL 286
           Q+FR H    D   P H DG RPCR+
Sbjct: 266 QLFRLHASVCDRAAP-HDDGDRPCRV 290


>10_05_0101 -
           9167383-9167679,9167883-9167961,9168161-9168326,
           9169201-9169299,9169969-9171361
          Length = 677

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 353 TLQNLHTPRHDLCKCSVRSR 412
           T+QNL+ PR DLC+ S  S+
Sbjct: 5   TIQNLYAPRADLCEPSCSSK 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,574,455
Number of Sequences: 37544
Number of extensions: 352993
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)