Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3702
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 38 0.007
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 37 0.012
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 37 0.016
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 31 1.0
AF067609-7|AAC17536.1| 162|Caenorhabditis elegans Hypothetical ... 29 2.4
AF067609-6|AAC17535.1| 203|Caenorhabditis elegans Hypothetical ... 29 2.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 5.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 5.4
AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical ... 28 7.2
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/83 (27%), Positives = 39/83 (46%)
Frame = +3
Query: 216 LGVTFDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 395
LG ++ F H K + A F L ++ +K + + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206
Query: 396 VVFAHAARIHLKSFQIIQSRFCR 464
VV + + K+ + +Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 216 LGVTFDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 395
LG+ DS++TF+PHIK + + L R ++ + L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254
Query: 396 VVFA 407
V++
Sbjct: 255 AVYS 258
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 36.7 bits (81), Expect = 0.016
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 216 LGVTFDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 395
LG ++ F H + + A F L ++ +K + + LYKT IRP + Y +
Sbjct: 180 LGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---ILLYKTFIRPRLEYGT 236
Query: 396 VVFAHAARIHLKSFQIIQSRFCR 464
VV + + K+ + +Q+ F R
Sbjct: 237 VVSSPTKKSDEKTIESVQNAFTR 259
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 216 LGVTFDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 395
LG+ D ++ F HI V + + R ++ S S + LYKT + P+M Y S
Sbjct: 979 LGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCS 1035
Query: 396 VVFA 407
V+A
Sbjct: 1036 EVYA 1039
>AF067609-7|AAC17536.1| 162|Caenorhabditis elegans Hypothetical
protein C23H5.8b protein.
Length = 162
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 335 GHFTSPTYHRVETS*NEGGT-VAYRLDVGAECHPTVEGDA*IFDLQ**SQNHCLPFNTRI 159
GH T+ T +E + ++ VAY +D+G+E E F SQN C+ NT +
Sbjct: 52 GHPTNGTSFCIEGNHDQKTAHVAYHIDLGSEVLAP-ESVEHSFSENLGSQNGCVNNNTGV 110
Query: 158 VYTFA 144
VY FA
Sbjct: 111 VYCFA 115
>AF067609-6|AAC17535.1| 203|Caenorhabditis elegans Hypothetical
protein C23H5.8a protein.
Length = 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 335 GHFTSPTYHRVETS*NEGGT-VAYRLDVGAECHPTVEGDA*IFDLQ**SQNHCLPFNTRI 159
GH T+ T +E + ++ VAY +D+G+E E F SQN C+ NT +
Sbjct: 52 GHPTNGTSFCIEGNHDQKTAHVAYHIDLGSEVLAP-ESVEHSFSENLGSQNGCVNNNTGV 110
Query: 158 VYTFA 144
VY FA
Sbjct: 111 VYCFA 115
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 507 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 623
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 507 HDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYI 623
H D + E+ ++ + S RH + E+P IV +G YI
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEYI 5412
>AL132860-6|CAB60526.1| 373|Caenorhabditis elegans Hypothetical
protein Y56A3A.9 protein.
Length = 373
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Frame = +3
Query: 216 LGVTFDSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLRNKVTLYKTCIRPVMTYAS 395
LG+ FDS + R H ++ R L ++ + + +T +K +P TYA
Sbjct: 74 LGLHFDSMLCMREHHAQIKKRLQSQLNQMKGLAGTTWGSNKELMLTTFKAITKPGATYAC 133
Query: 396 VVFAHAAR-IHLKSFQIIQSRFCRIAVGAPWFVRNVDLHDDLDLESISKYLQSASMRH 566
++ + + S R+ G +HD+ + +S ++ + ++
Sbjct: 134 QSWSQLVKPTRMDSLDSSYRAILRVCCGLTKDTPGYHIHDEAGILPLSHKIKLMNQQY 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,658
Number of Sequences: 27780
Number of extensions: 288610
Number of successful extensions: 671
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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