Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3699
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    30   0.19 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.76 
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   1.7  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    26   3.0  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    25   9.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.3  

>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = -3

Query: 437 KKFNIWEALPNT-FDEFLASFFGVHSSTV*LLLRPHILSGDSHIVMSMDHFLSRTIQLWN 261
           +K N W  LP   F  F A    +  + +  LL   +L+ ++ ++MS  H    T  ++ 
Sbjct: 43  RKLN-WYVLPEMGFQAFSALLLLLSGAWITFLLNVPMLAWNAKMIMSNTHMHDSTT-IFK 100

Query: 260 KLPSTVFPKRYDMSFFKRGL*RVFIYLFIYLF 165
            + S     R   SFFK     VF +++++LF
Sbjct: 101 DVSS-----RQKRSFFKLACFAVFFFVYLFLF 127


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -3

Query: 185 YLFIYLFT*VLPHHKHLTL-----KINLNCLIYGLMHVTTM 78
           +L +Y FT  LPHH H++      KI+L  LI  ++ VTTM
Sbjct: 257 FLCVY-FTLNLPHHNHVSFMTRFRKIDLKGLILLIIGVTTM 296


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -3

Query: 152 PHHKHLTLKINLNCLIYGLMHVTTMA 75
           PH +++T+++N   LI  LMH+ +++
Sbjct: 484 PHKEYVTVEVNQTSLIDWLMHIVSIS 509


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
 Frame = -2

Query: 336 SYIKW---RQSHSDVYGPLFV 283
           SY++W    QSHS+++GP+ +
Sbjct: 130 SYLEWIGENQSHSEIWGPIVI 150


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 359 CWNALQKKRPKTHQRYLV 412
           CWN + +   + H+RYL+
Sbjct: 108 CWNTVAEYLDEQHERYLI 125


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 108 NLWPDACDNNGVHSIGNSSARKLNPIKKKKK 16
           + W  ACD+  +H    + +R L PI  + K
Sbjct: 646 HFWSIACDDGSLHLYSLTGSRLLPPIMIESK 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,290
Number of Sequences: 5004
Number of extensions: 43926
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)