Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3699
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0778 - 6009290-6010287,6010351-6010444                           31   0.76 
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184...    28   4.1  
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335...    27   9.4  
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    23   9.8  

>07_01_0778 - 6009290-6010287,6010351-6010444
          Length = 363

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -2

Query: 525 LKLEVLIVLIRP*ADILLVLSKLGQILGAEKIQYLGGITKYL 400
           LKL V+I ++    D+L V+ +L   LG   I  L GITK L
Sbjct: 80  LKLAVVITMLPTSPDLLPVILRLYATLGTFPIDQLNGITKEL 121


>07_03_1690 -
           28716998-28717091,28717203-28717897,28718264-28718446,
           28718552-28719585,28719805-28719978,28720051-28720168,
           28720339-28720521,28720647-28720739,28720981-28721166,
           28722247-28722507
          Length = 1006

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 190 NTLHKPRLKKDMS*RLGNTVEGSLFQSWIVRDKKWSIDITM 312
           NT H P  K+D S +   T EGS  Q      ++W+I   M
Sbjct: 802 NTSHTPSKKQDHSSKSTVTAEGSFAQERAPASQEWNICTNM 842


>11_06_0421 +
           23331702-23331723,23332161-23332197,23333397-23333533,
           23333675-23334241,23335068-23335777,23335915-23336102,
           23336489-23336918
          Length = 696

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -1

Query: 292 TFCHVLSNFGINSPLRCFPSAMTCPSSNEACEEYLFIYLFIYLHKYCHI 146
           +FC +   FG    + CFP  ++    + AC  Y F+   + +  Y  +
Sbjct: 625 SFCSLAFWFGRLLSIYCFPVMLSTIGLSGACAIYAFVCCLVLVFVYLRV 673


>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 22.6 bits (46), Expect(2) = 9.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 293 HFLSRTIQLWNKLPSTVF 240
           H  SR  ++WN +PS  F
Sbjct: 277 HLASRYQEIWNNIPSGDF 294



 Score = 22.6 bits (46), Expect(2) = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 266 WNKLPSTVFPKRY 228
           WN  PS  FPK+Y
Sbjct: 299 WNIEPSLFFPKQY 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,446
Number of Sequences: 37544
Number of extensions: 248773
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)