Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3698
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    29   4.6  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    29   4.6  
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301...    29   4.6  

>07_01_0404 +
           3093851-3094051,3094622-3094948,3096685-3096798,
           3096897-3097109,3097975-3098151,3098270-3100091,
           3100107-3100927,3101070-3101390
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -1

Query: 494 HSTSHLDTARETCN--SFI--KNIKIIIL*WCKSVQTI*NIIIMKQ 369
           HST+H  TA E+C+  SFI  ++  ++ + W + ++ I N I+ ++
Sbjct: 603 HSTAHTSTAPESCHSPSFIPEESKSVVAVDWPEPLEPISNAIVAEE 648


>07_01_0400 +
           3048607-3048807,3049378-3049704,3051441-3051554,
           3051653-3051865,3052731-3052907,3053026-3054847,
           3054863-3055683,3055826-3056146
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -1

Query: 494 HSTSHLDTARETCN--SFI--KNIKIIIL*WCKSVQTI*NIIIMKQ 369
           HST+H  TA E+C+  SFI  ++  ++ + W + ++ I N I+ ++
Sbjct: 603 HSTAHTSTAPESCHSPSFIPEESKSVVAVDWPEPLEPISNAIVAEE 648


>07_01_0396 +
           3016900-3017175,3017926-3018039,3018138-3018350,
           3019216-3019392,3019511-3021332,3021348-3022168,
           3022311-3022631
          Length = 1247

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
 Frame = -1

Query: 494 HSTSHLDTARETCN--SFI--KNIKIIIL*WCKSVQTI*NIIIMKQ 369
           HST+H  TA E+C+  SFI  ++  ++ + W + ++ I N I+ ++
Sbjct: 519 HSTAHTSTAPESCHSPSFIPEESKSVVAVDWPEPLEPISNAIVAEE 564


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,379
Number of Sequences: 37544
Number of extensions: 299915
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)