Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3698
         (689 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S66427-1|AAB28543.1| 1257|Homo sapiens retinoblastoma binding pr...    30   8.9  
S57162-1|AAB25835.2|  851|Homo sapiens retinoblastoma binding pr...    30   8.9  
S57160-1|AAB25834.1|  866|Homo sapiens retinoblastoma binding pr...    30   8.9  
S57153-1|AAB25833.1|  920|Homo sapiens retinoblastoma binding pr...    30   8.9  
BC026230-1|AAH26230.1|  424|Homo sapiens ARID4A protein protein.       30   8.9  

>S66427-1|AAB28543.1| 1257|Homo sapiens retinoblastoma binding
           protein 1 protein.
          Length = 1257

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   LDTNDIWIHIYITIGLLFTNIYKS-N*HTNIDFYFYRFSSEISSFNCSFNELYH 163
           +D+  +W  IY+ +G+   N   S N  T    Y Y F     S N  F  ++H
Sbjct: 359 IDSGAVWKQIYMDLGIPILNSAASYNLKTAYRKYLYGFEEYCRSANIQFRTVHH 412


>S57162-1|AAB25835.2|  851|Homo sapiens retinoblastoma binding
           protein 1 isoform III protein.
          Length = 851

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   LDTNDIWIHIYITIGLLFTNIYKS-N*HTNIDFYFYRFSSEISSFNCSFNELYH 163
           +D+  +W  IY+ +G+   N   S N  T    Y Y F     S N  F  ++H
Sbjct: 22  IDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTVHH 75


>S57160-1|AAB25834.1|  866|Homo sapiens retinoblastoma binding
           protein 1 isoform II protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   LDTNDIWIHIYITIGLLFTNIYKS-N*HTNIDFYFYRFSSEISSFNCSFNELYH 163
           +D+  +W  IY+ +G+   N   S N  T    Y Y F     S N  F  ++H
Sbjct: 22  IDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTVHH 75


>S57153-1|AAB25833.1|  920|Homo sapiens retinoblastoma binding
           protein 1 isoform I protein.
          Length = 920

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   LDTNDIWIHIYITIGLLFTNIYKS-N*HTNIDFYFYRFSSEISSFNCSFNELYH 163
           +D+  +W  IY+ +G+   N   S N  T    Y Y F     S N  F  ++H
Sbjct: 22  IDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTVHH 75


>BC026230-1|AAH26230.1|  424|Homo sapiens ARID4A protein protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 5   LDTNDIWIHIYITIGLLFTNIYKS-N*HTNIDFYFYRFSSEISSFNCSFNELYH 163
           +D+  +W  IY+ +G+   N   S N  T    Y Y F     S N  F  ++H
Sbjct: 359 IDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFEEYCRSANIQFRTVHH 412


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,023,251
Number of Sequences: 237096
Number of extensions: 1921297
Number of successful extensions: 2095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2095
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)