Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3698
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        28   7.2  
Z68219-8|CAD59155.1|  430|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68219-1|CAA92481.2|  387|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68216-7|CAD59147.1|  430|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 473 CLDEKYCDFLTRIQSS-VF*TFKIILIFEICNHVSSI 580
           C   KYC+F    Q+   F   K I  FE+C HV SI
Sbjct: 240 CCFRKYCNFTQLFQNECTFCNIKFISFFEMCRHVGSI 276


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 345 MRGYLKTQLLHYNYILDSLNTF 410
           ++ YLK QL HYN+I+ S+  F
Sbjct: 51  LKVYLKIQLFHYNFIILSIPMF 72


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 353  APHHLQNPIPSNLTVQQYC*YLYQIKR 273
            AP H  NP+  N+T QQ   Y+ Q+++
Sbjct: 1540 APMHTMNPMMQNMTPQQQYLYMQQLQQ 1566


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 353  APHHLQNPIPSNLTVQQYC*YLYQIKR 273
            AP H  NP+  N+T QQ   Y+ Q+++
Sbjct: 1538 APMHTMNPMMQNMTPQQQYLYMQQLQQ 1564


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 353  APHHLQNPIPSNLTVQQYC*YLYQIKR 273
            AP H  NP+  N+T QQ   Y+ Q+++
Sbjct: 1538 APMHTMNPMMQNMTPQQQYLYMQQLQQ 1564


>Z68219-8|CAD59155.1|  430|Caenorhabditis elegans Hypothetical
           protein T05A1.1a protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 72  KVTNIQTSIFIFIDLALRYHHLTVLLMNYITFYFITFELDIEG*KAIYMV*VTIHLIRDI 251
           + T I + + +        H++  L++ Y  F+F + E         Y+V +T HLI   
Sbjct: 315 RTTTILSCMVLLFAFTWLPHNVVTLMIEYDGFFFHSDETSATSTDHTYIVSMTAHLIS-- 372

Query: 252 YICNYKDPF 278
            + N  +PF
Sbjct: 373 MLTNVTNPF 381


>Z68219-1|CAA92481.2|  387|Caenorhabditis elegans Hypothetical
           protein T05A1.1b protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 72  KVTNIQTSIFIFIDLALRYHHLTVLLMNYITFYFITFELDIEG*KAIYMV*VTIHLIRDI 251
           + T I + + +        H++  L++ Y  F+F + E         Y+V +T HLI   
Sbjct: 272 RTTTILSCMVLLFAFTWLPHNVVTLMIEYDGFFFHSDETSATSTDHTYIVSMTAHLIS-- 329

Query: 252 YICNYKDPF 278
            + N  +PF
Sbjct: 330 MLTNVTNPF 338


>Z68216-7|CAD59147.1|  430|Caenorhabditis elegans Hypothetical
           protein T05A1.1a protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +3

Query: 72  KVTNIQTSIFIFIDLALRYHHLTVLLMNYITFYFITFELDIEG*KAIYMV*VTIHLIRDI 251
           + T I + + +        H++  L++ Y  F+F + E         Y+V +T HLI   
Sbjct: 315 RTTTILSCMVLLFAFTWLPHNVVTLMIEYDGFFFHSDETSATSTDHTYIVSMTAHLIS-- 372

Query: 252 YICNYKDPF 278
            + N  +PF
Sbjct: 373 MLTNVTNPF 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,571
Number of Sequences: 27780
Number of extensions: 323886
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)