BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3697
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 31 0.64
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 30 0.85
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 0.85
05_03_0458 + 14280953-14281866,14281964-14282912 30 1.1
11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451 29 1.5
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 1.5
10_08_1037 - 22477358-22478752 29 2.6
01_06_1808 - 40023533-40023966,40024078-40024204 29 2.6
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 28 3.4
07_01_0516 - 3850252-3852870 28 3.4
04_03_0799 - 19805190-19805749,19806316-19806403 28 4.5
02_02_0556 - 11444512-11445577,11445730-11446007 28 4.5
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 4.5
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267 28 4.5
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 23 5.2
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 27 6.0
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 27 6.0
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 6.0
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 27 6.0
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 27 6.0
03_01_0450 - 3453175-3453182,3453335-3453642,3453872-3454339,345... 27 6.0
02_04_0263 + 21385008-21386183 27 6.0
11_06_0510 + 24420402-24422582 27 7.9
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567... 27 7.9
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 7.9
07_03_1228 - 25009736-25010965 27 7.9
07_03_1139 + 24254662-24255306 27 7.9
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 27 7.9
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 27 7.9
01_06_1646 - 38887178-38887271,38888230-38888270,38888744-388888... 27 7.9
01_06_1224 - 35508842-35510404 27 7.9
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 27 7.9
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 30.7 bits (66), Expect = 0.64
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -2
Query: 277 AGQSVVCSRRVSTRT-KIPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLRENS 101
+G+ V SR S RT P PP P P LPP P PSP P+ L EN+
Sbjct: 336 SGRRSVKSRSDSVRTFGQPPAPPPPPPFAPTLPPPPPP----RRKPPSPSPPSSPLIENT 391
Query: 100 TSFPLSRTEKLSV 62
++ + T ++
Sbjct: 392 SALRSTTTTDTTI 404
>10_07_0061 + 12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 30.3 bits (65), Expect = 0.85
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 291 HLSWLNWLGTNNGHN-SRSSKNTSYLPGSNSKFTFEKPRAPVKTVQRKPQEQRPLKYXQQ 467
+LS +N L +N + R+ +PGSN T ++ + Q+ P +Q+ L+ QQ
Sbjct: 1082 NLSMMNQLNRSNINPLQRAMMGPPKMPGSNYPLTPQQQMQLQQQFQQNPLQQQQLQQLQQ 1141
Query: 468 QLQK 479
Q Q+
Sbjct: 1142 QQQQ 1145
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 0.85
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 226 PLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRP 125
P F P P P PPLP+ Y P P P P
Sbjct: 559 PAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPP 592
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 244 STRTKIPLFPPDPEPVHRCLPPL-PRQVYCFLHPKPSPLRPAKVLRENSTSFP 89
S+ + P PP P+ PPL P + C HP P P P+ +++S P
Sbjct: 56 SSPSSSPSSPPPLPPLQPTPPPLPPTTLSCSSHPTPPP-PPSPTTSPSASSLP 107
>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
Length = 735
Score = 29.5 bits (63), Expect = 1.5
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 7/102 (6%)
Frame = +1
Query: 43 NQCCNFSRIIFRCVTMEMRWSFXXXXXX--VGVAMASDEENSIPD-----VGVEEDSDEL 201
N C+F ++R + + R F G+ E N D VG++E SDEL
Sbjct: 87 NNSCSFGGFVYRSMDLLNRAKFRHKIGTDIKGIKSRIKEVNDRHDRVNEFVGIDEKSDEL 146
Query: 202 ALDQEETRESSSACLHADCIQRSAQRLSSNTFPG*TGWVPTT 327
T ESS D + S Q+L + G G TT
Sbjct: 147 VRMLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTT 188
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 142 ASDEENSIPDVGVEEDSDELALDQEETRESSSACLHADCIQRSAQRLSS 288
+S++E+++ V E D++A TRES+ ++C + AQ+ SS
Sbjct: 140 SSNQESTVSPPPVSECGDKIAQQGSSTRESTVLLPVSECCNKVAQQESS 188
>10_08_1037 - 22477358-22478752
Length = 464
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 229 IPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLRENSTSFPLSR 80
+P PP P+ H PLP Q PKP +R K+ R S P++R
Sbjct: 238 LPASPPQPQHQHHPHRPLPPQ---HQQPKPPSMRLQKI-RPPPISTPVAR 283
>01_06_1808 - 40023533-40023966,40024078-40024204
Length = 186
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 285 VQHLSWLNWLGTNNGHNSRSSKNTSYLPGSNSKFTFEKPRAPVKTVQRKPQEQRP 449
V+H++ + W G+ N S S N + P S++ P P +Q+P
Sbjct: 105 VKHVAHIGWDGSTNTTTSLRSWNRAAPPSSSASAASTSSALPAPAPPPPPSQQQP 159
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -2
Query: 256 SRRVSTRTKIPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLRENSTSFPLSRT 77
S R+ T + + + P P P + PP + C+ P P P P ++ + PL R
Sbjct: 414 SSRIETSSSMGIPKPAPPPPPQKNPPPNLKGQCYGQPPPPPPLPLQI-QVGKDGSPLPRL 472
Query: 76 EKL 68
+ L
Sbjct: 473 KPL 475
>07_01_0516 - 3850252-3852870
Length = 872
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -2
Query: 247 VSTRTKIP---LFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLR 128
+ST + P L PP P P R LPP P P P P R
Sbjct: 3 ISTSSAAPPPRLLPPQPPPTSRPLPPPPPPPPPAHGPSPPPPR 45
>04_03_0799 - 19805190-19805749,19806316-19806403
Length = 215
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = -2
Query: 226 PLFPPDPEPVHRCLPPLPRQVY--CFLHPKPSP 134
P+ P P P C PP Q Y C PKP P
Sbjct: 102 PVPYPAPPPPPACCPPSTHQCYHCCPAPPKPKP 134
>02_02_0556 - 11444512-11445577,11445730-11446007
Length = 447
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 229 IPLFPPDPEPVHRCLPPLPRQV-YCFLH 149
+P+ P P P H L PLP+ + Y FLH
Sbjct: 247 LPILEPLPRPPHE-LKPLPQGIRYAFLH 273
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 142 ASDEENSIPDVGVEEDSDELALDQEETRESSSACLHADCIQRSAQRLSSNTF 297
+S + +S D + +S + + T+E+S + H D ++ ++ +LSSN F
Sbjct: 321 SSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLSSNLF 372
>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
Length = 769
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 142 ASDEENSIPDVGVEEDSDELALDQEETRESSSACLHADCIQRSAQRLSSNTF 297
+S + +S D + +S + + T+E+S + H D ++ ++ +LSSN F
Sbjct: 321 SSTDMSSEGDKHIAAESCSSHMPETATKEASKSTDHEDSLELTSTQLSSNLF 372
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 23.4 bits (48), Expect(2) = 5.2
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -2
Query: 217 PPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKV 116
PP P+ + PP ++ P P P + AKV
Sbjct: 80 PPPPQKPDKVSPPPAQKPSKVSPPPPPPQKSAKV 113
Score = 22.6 bits (46), Expect(2) = 5.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -2
Query: 262 VCSRRVSTRTKIPLFPPDPEP 200
+ S R T K P PP P P
Sbjct: 30 IASTRTKTTRKSPPAPPPPRP 50
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 280 AAGQSVVCSRRV-STRTKIPLFPPDP-EPVHRCLPPLPRQVYCFLHPKPSP 134
AAG S S + P PP+P P H PPL R + P PSP
Sbjct: 348 AAGSSTPSSSQARKASAPAPPSPPEPPSPRHPASPPLLRSLPHQPTPPPSP 398
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -2
Query: 229 IPLFPPDPEPVHRCLPPLPRQVYCFLH-PKPSPLRPAKVLRENSTSFPLSRTEKL-SVKN 56
+P+ P P P P P Y FLH + +P+ + L E+ T L+ EK S+
Sbjct: 450 LPIMEPPPRPPLELKPLPPSLRYAFLHNGREAPVIISDKLSEDETQRLLAVLEKYRSILG 509
Query: 55 YN 50
Y+
Sbjct: 510 YS 511
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 127 PAKVLRENSTSFPLSRTEKLSVKNYNTDFCIRQ 29
P + ENS FP +R ++S N NT F + +
Sbjct: 536 PQNAIPENSQGFPDTRAREVSQSNTNTFFDVSE 568
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = -2
Query: 256 SRRVSTRTKIPLFPPDPEPVHRCLPPLPRQVYCFLH-PKP-SPLRPAKVLRENSTSFPLS 83
SRR+ +P PP P P+ + P P + +C H P+P SP P PL
Sbjct: 380 SRRLLLLLLLP--PPGPPPLAQAPPRHPPRPWCRPHTPRPRSPHSPTH--PRPRLHHPLP 435
Query: 82 RTEKLSVKNYNTD 44
R + V N D
Sbjct: 436 RPTRTGVANVTDD 448
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 223 LFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLREN 104
+ PP P P LPP P+ + P P P P+ + N
Sbjct: 540 MLPPPPPPPRNMLPPPPKSM-----PPPPPKFPSNEMSRN 574
>03_01_0450 -
3453175-3453182,3453335-3453642,3453872-3454339,
3454796-3455371,3458362-3458615
Length = 537
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -3
Query: 381 CCCCLVGTRYXXXXXXCGRCWYPASSARKGVGRKPLGRALYAVGV 247
CC L+ R G W P +A G G+ P+ + L AV +
Sbjct: 19 CCGVLLAARPLEGDVAGGGGWRPMQTAGGGGGKMPVMQILQAVPI 63
>02_04_0263 + 21385008-21386183
Length = 391
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = +1
Query: 139 MASDEENSIPDVGVEEDSDELALDQEETRESSSACLHAD-CIQRSAQRLSSNTFPG*TGW 315
+ASD ++PD+ E D +L + +S A +++A+R ++ T T W
Sbjct: 216 VASDAWRALPDMSEERDEPQLVANPGRVLAASGYPTDAQGAFKKTAERYTTTTTGDATAW 275
Query: 316 ------VPTTATTAGAA 348
P TA T AA
Sbjct: 276 SSEGDMAPNTAETCLAA 292
>11_06_0510 + 24420402-24422582
Length = 726
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 125 WSEWRWLRMKKTVYLTWEWR 184
W EWRW KT++ +W ++
Sbjct: 413 WLEWRWNFRVKTMWDSWRYK 432
>10_02_0135 +
5674786-5675040,5675179-5675490,5676505-5677010,
5677057-5677103,5677457-5677918,5678071-5678294
Length = 601
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 142 ASDEENSIPDVGVEEDSDELALDQEETRESSSACL 246
ASD N + D+GV+ + +++ + +S+ AC+
Sbjct: 283 ASDALNRLADLGVQSNDSRTRMEEIKQAKSAKACM 317
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -2
Query: 217 PPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPA 122
PP P C PPLP P P PL P+
Sbjct: 1147 PPLPSDSPPCQPPLPPSPPPATPPPPPPLSPS 1178
>07_03_1228 - 25009736-25010965
Length = 409
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 148 DEENSIPDVGVEEDSDELALDQEETRE 228
+EE P+ G EE+ D+ D+EE E
Sbjct: 342 EEEEEEPEEGAEEEEDDEEEDEEEEEE 368
>07_03_1139 + 24254662-24255306
Length = 214
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/48 (43%), Positives = 22/48 (45%)
Frame = -2
Query: 238 RTKIPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLRENSTS 95
+T P PDP LPPL R P PSPL A ENSTS
Sbjct: 148 KTPPPAHRPDPATAVPHLPPLGRD------PSPSPLPTA---GENSTS 186
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 226 PLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVLRENSTSFPLSRT 77
P P P HRC P KP P P+ +N T+ P + T
Sbjct: 9 PACPNAANPFHRCADYCPVPAPAAATAKPPPPPPSSRPAQNGTAAPQNGT 58
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Frame = -2
Query: 217 PPDPEPVHRCLPPLPRQV-----YCFLHPKPSP 134
PP P R LPP P + Y + HP+P P
Sbjct: 190 PPPPPEALRPLPPFPPTMLAPPAYPYYHPQPQP 222
>01_06_1646 -
38887178-38887271,38888230-38888270,38888744-38888827,
38888933-38889080,38889232-38889299,38889563-38889634,
38890479-38890673
Length = 233
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 127 VGVAMASDEENSIPDVGVEEDSDELALDQEETRESSSACLHADCIQR 267
VGV M D + I +E+ DE A+D + H CIQR
Sbjct: 28 VGVGMGMDGKGMIECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQR 74
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 244 STRTKIPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVL 113
++ T +P + P P PV + LP + LHP P +R +++L
Sbjct: 51 ASETHLPPYAPPPAPV---VSELPDDLEFGLHPPPPLVRASELL 91
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -2
Query: 223 LFPPDPEPVHRCLPPLP--RQVYCFLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYN 50
L P P P LPPLP R F PSPLRPA + P R L++ +Y
Sbjct: 77 LASPYPSPG---LPPLPSRRSSSPFAISSPSPLRPAAAMPPADLPRP-PRRGPLAIVDYA 132
Query: 49 TD 44
D
Sbjct: 133 HD 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,565
Number of Sequences: 37544
Number of extensions: 304010
Number of successful extensions: 1532
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -