Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3696
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   3.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   6.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   6.8  

>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +2

Query: 401 RRYLKK--KLSIQFGMNGYHHPVKFCR*VIMRYNLLCRADIICASFVLLEVSMGFS--NC 568
           R++LK+  + +++   +     V+F   V++R  L   ADI    FVL EV +G +  + 
Sbjct: 312 RKFLKQFTQATVEVWSSTRDDSVRFSAVVLLR-TLCLTADITLLEFVLKEVYLGMARQSA 370

Query: 569 LTTCH 583
            TT H
Sbjct: 371 YTTVH 375


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +2

Query: 413 KKKLSIQFGMNGYHHPVKFCR*VIMRYNLLCRADIICASFVLLEVSMGFSNCLTTC 580
           K+   +QFG+NG    VK     + R +L    D   A    L++ MG SN    C
Sbjct: 11  KRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQINC 66


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 109  KTDIQSLKYIWTNRHGIMQLNIVKNHKIYR*CYMRLFHKYHSLVFTLID 255
            K  +  + Y W   HG     I K   +Y    +R+F +   L+  ++D
Sbjct: 1038 KPSLMEVVYAWA--HGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVD 1084


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 99  CLRQDRHSVFEIHLDKSSRNNAIKYCEKS*NLSVVLYATISQV 227
           CLR DR     I+L     N  +K C+   N   + Y +I ++
Sbjct: 337 CLRGDRWVPLRINLLLPDENGKLKVCDDVDNPEPIKYGSIVEL 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,103
Number of Sequences: 5004
Number of extensions: 52845
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)