Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3696
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484...    29   4.0  
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   5.3  
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779...    27   9.3  

>07_03_0557 +
           19447367-19447517,19447630-19447730,19448359-19448480,
           19448725-19448912,19449000-19449178,19449370-19449711,
           19449795-19449859,19450259-19450317,19450486-19450573,
           19450653-19450722,19450759-19450992,19451072-19451411,
           19451643-19451691,19452690-19452780,19453077-19453442
          Length = 814

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 205 NTTDKFYDFSQYLIALFRDDLSK 137
           N +  FYD   Y++++++DD+SK
Sbjct: 503 NLSKLFYDCKDYILSIYQDDISK 525


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 94  WLA*DKTDIQSLKYIWTNRHGIMQLNIVKN 183
           +++  +T  Q L+ + T++HGI++LN  KN
Sbjct: 493 YMSLQETQCQILEKVLTDQHGILELNTQKN 522


>09_04_0231 +
           15875955-15876005,15876141-15876191,15877911-15877976,
           15878073-15878134,15878639-15878717,15878839-15878943,
           15879032-15879142,15879492-15879629,15879821-15879895,
           15880011-15880131,15880196-15880350,15880605-15880679,
           15881124-15881327,15881396-15881536
          Length = 477

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 156 SVTICPNVFQRLNVCLVLSKPLQGKPVLLIMVI 58
           S+TICPN+  ++ + LV+  P  G     I ++
Sbjct: 317 SLTICPNIAGQILISLVMDPPKLGDEAFEIFMV 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,412,810
Number of Sequences: 37544
Number of extensions: 288295
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)