Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3696
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    29   2.1  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    29   2.1  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   4.8  

>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 565 VTEAHRN-LQ*DKRCTNNVCPTKQIVTHDYLAAKFNWMVVPIHTELNTK 422
           + E  +N L  + R    V P +     DYL  +  WM V   TE NTK
Sbjct: 213 IAELRKNGLWSNSRLPKCVEPERNKTHWDYLLEEVKWMAVDFRTETNTK 261


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 565 VTEAHRN-LQ*DKRCTNNVCPTKQIVTHDYLAAKFNWMVVPIHTELNTK 422
           + E  +N L  + R    V P +     DYL  +  WM V   TE NTK
Sbjct: 213 IAELRKNGLWSNSRLPKCVEPERNKTHWDYLLEEVKWMAVDFRTETNTK 261


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 223 KYHSLVFTLIDIL*VNCFSHMNVSQY 300
           K HSL F L+ +  V C SH+  S Y
Sbjct: 9   KIHSLKFLLVAVFMVTCLSHLYSSYY 34


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 223 KYHSLVFTLIDIL*VNCFSHMNVSQY 300
           K HSL F L+ +  V C SH+  S Y
Sbjct: 9   KIHSLKFLLVAVFMVTCLSHLYSSYY 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,406
Number of Sequences: 27780
Number of extensions: 287625
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)