Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3693
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   211   6e-56
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    32   0.066
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.1  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    28   1.4  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    28   1.4  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   4.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   7.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.6  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   7.6  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   7.6  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   7.6  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  211 bits (516), Expect = 6e-56
 Identities = 100/190 (52%), Positives = 127/190 (66%)
 Frame = -1

Query: 673 IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQAL 494
           ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL
Sbjct: 80  VRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQAL 139

Query: 493 SIPTKISKGTIEIINDVHILKPGDKVGASEATLFNMLNISPFSYGLVVKQVYDSGTIFAP 314
            IPTKI++GTIEI +DVH++    KVG SEATL NMLNISPF+YG+ V  +YD G +F+P
Sbjct: 140 GIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSP 199

Query: 313 EILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXXXXXXXX 134
           EILD+  EDL     +  + + A+SL   YPTI S  HS+ N +KNL+            
Sbjct: 200 EILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEG 259

Query: 133 XXXIKEFIKD 104
               K F+ D
Sbjct: 260 TEQTKAFLAD 269


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
 Frame = -1

Query: 673 IKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTS 509
           + G VG +FT     EV     E+ VQ   AR GA+AP + VIPA       G  P +  
Sbjct: 96  LHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDD 154

Query: 508 FF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLFNMLNI--SPFSY 362
                      + L +PT +  G + ++ D  +   G ++ + +  L  +  I  + F  
Sbjct: 155 ILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKV 214

Query: 361 GLV 353
           GL+
Sbjct: 215 GLL 217


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 453 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 578
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 446 IVDDFNSTL*NLGRDRKSLEKRGLLWTEAGVVGGNDH*QWG 568
           IVD  NS   +  R  + L K+G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +2

Query: 107 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGTE 286
           L  L+ G S+       SSDG    + + + ++  + SWV  ++R S  IS S  E+  +
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140

Query: 287 IFWFDVQNF 313
              FD++ F
Sbjct: 141 ---FDIEAF 146


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 128 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSS 268
           G FF  + CD + G K  +   N       S   N   K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 519 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 647
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +2

Query: 104  VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVTNSQRKSSYISNSSLELGT 283
            V   L D G   +  +C+ +D  ++++T    +     ++++    KS  + N   EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075

Query: 284  EI 289
            E+
Sbjct: 1076 EL 1077


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 482 GRDRKSLEKRGLLWTEAGVVGGNDH*QWGNGTRTSWSLDF 601
           G  R ++EK  + W  A  +   DH  W    + S SL+F
Sbjct: 181 GNGRVNIEKCLIAWMAAAHLKPKDHELWFTCAKLSESLEF 220


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 446 IVDDFNSTL*NLGRDRKSL 502
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 276 LARRSSGLMSKISGAKIVPESYTCLTTR 359
           LAR SS      SGAK+VP+ +  +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,686
Number of Sequences: 5004
Number of extensions: 53861
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)