Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3691
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    30   0.26 
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   4.3  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    26   5.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   5.6  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   9.9  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    25   9.9  

>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 194 ILQCPGDAVFVPAGAPHQVRNLLDCIKVAEDFVSPENVSRCFELAQQFRQLSRQ 355
           + Q PG  VFVP+G  HQV N+   + +  ++ +   + + +   ++  ++S +
Sbjct: 301 LFQYPGQTVFVPSGWYHQVLNIGTTLSINHNWCNASCILQMYTALKEQYEVSAE 354


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 465 REHLPHLISTSNVAKFRI*RKIGG 536
           REH+P++IST++   F    K  G
Sbjct: 128 REHIPYIISTASATSFEDIEKASG 151


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 171 STAWRGTPSCSVRGTPCSCRRGRRIRCVTCWTASR 275
           +T+WR      + GT  + R G  ++  TC+++ R
Sbjct: 95  ATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVR 129


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 620 NHISSTLTHTTGTQSNGRAATHTARITLAPNLTLN 516
           NHIS  L+   G   NG+   +T+R  +   L +N
Sbjct: 816 NHISCPLSSIKGVSVNGKRLVYTSRALVEWALVVN 850


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 601 SHTQLVHNRTDARRHTQRASHSPPILR 521
           S T ++ N   + RH Q+A H  PILR
Sbjct: 252 SGTLVISNGWISYRHLQKAFHQIPILR 278


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 2   PPAALWHIYAAKDADKIRDFLVRAELDRGARPR 100
           P   +WHIY   D DK     + AE++R  + R
Sbjct: 365 PHYVIWHIYEPSDDDK----RIMAEMERERKER 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,109
Number of Sequences: 5004
Number of extensions: 33644
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)