Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3691
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 38 0.005
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 32 0.42
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 32 0.42
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 32 0.42
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 32 0.42
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 32 0.42
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 32 0.42
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 32 0.42
U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylser... 31 0.74
U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylser... 31 0.74
Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical pr... 28 6.9
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 28 6.9
AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical ... 27 9.1
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 155 ERLYREYGVEGYAILQCPGDAVFVPAGAPHQVRNLLDCIKVAEDFVSPENVSRCFELAQQ 334
ERL+ + V + +Q PG+ VFVP+ HQ NL D I + ++++ N+ L Q+
Sbjct: 199 ERLFEQAKVIKF--VQEPGEIVFVPSNWYHQAHNLEDTISINHNWMNSTNL----HLVQE 252
Query: 335 FRQLSRQHSNKEDKLQ 382
F LSR+ + ++LQ
Sbjct: 253 F--LSRRELDVREELQ 266
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 808 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 853
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1022 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1067
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1158 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1203
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1207 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1252
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1199 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1244
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1210 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1255
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 290 VSPENVSRCFELAQQFRQLSRQHSNKEDKLQIKNIVYHAVKDSLCCLE 433
+SPE+ + +L Q+F + R+H +ED L +V H V S CLE
Sbjct: 1211 ISPEHRFKV-DLDQKFADVKREHEGRED-LAYSQMVQHPVTVSADCLE 1256
>U70849-6|ABD63227.1| 284|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform b protein.
Length = 284
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 89 ARPRPQHDPVHDQTWYLDAALRERLYREYGVEGYAILQC---PGDAVFVPAGAPHQVRNL 259
A + +H P TW+ + +R+ + YA ++C PG+ +FVP+G H V N
Sbjct: 111 AHEKGKH-PDEGITWF--QTVYKRVRSPSWPKEYAPIECRQGPGETMFVPSGWWHVVINE 167
Query: 260 LDCIKVAEDFVSPENV 307
I V ++ S EN+
Sbjct: 168 EYTIAVTHNYCSVENL 183
>U70849-5|AAF99922.2| 400|Caenorhabditis elegans Phosphatidylserine
receptor familyprotein 1, isoform a protein.
Length = 400
Score = 31.1 bits (67), Expect = 0.74
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +2
Query: 89 ARPRPQHDPVHDQTWYLDAALRERLYREYGVEGYAILQC---PGDAVFVPAGAPHQVRNL 259
A + +H P TW+ + +R+ + YA ++C PG+ +FVP+G H V N
Sbjct: 227 AHEKGKH-PDEGITWF--QTVYKRVRSPSWPKEYAPIECRQGPGETMFVPSGWWHVVINE 283
Query: 260 LDCIKVAEDFVSPENV 307
I V ++ S EN+
Sbjct: 284 EYTIAVTHNYCSVENL 299
>Z82266-6|CAB05176.1| 393|Caenorhabditis elegans Hypothetical
protein F23B2.10 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.9
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 16/95 (16%)
Frame = +2
Query: 263 DCI---KVAEDFVSPENVSRCFELAQQFRQLS-------------RQHSNKEDKLQIKNI 394
DC+ + ED V +N+ R +++A+ LS + NK+++L+ N+
Sbjct: 151 DCVINNGLKEDVVMMKNIKRLYDIAKALNYLSMFSFSMKQIEREIEEFKNKKNQLRFYNM 210
Query: 395 VYHAVKDSLCCLEEALAKAE*VGSRTPPAFDLNLE 499
YH VK++ + + L K + V PP + + L+
Sbjct: 211 YYHFVKETYPEIMKWL-KNDLVRISAPPCWQVLLK 244
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 336 NCCASSKHRDTFSGDTKSSATLMQ 265
NCC + KH DT + KSS ++
Sbjct: 505 NCCETRKHTDTMLSNVKSSRVKLE 528
>AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical
protein ZK105.5 protein.
Length = 569
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 296 PENVSRCFELAQQFRQLSRQHSNKEDKLQIKN 391
PENVS CF+ F Q + S ++ L +KN
Sbjct: 401 PENVSDCFDPHYLFAQCRWRQSGRDAYLLLKN 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,921
Number of Sequences: 27780
Number of extensions: 212789
Number of successful extensions: 738
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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