Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3689
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.53 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.93 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.2  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    28   1.6  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   2.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.1  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   5.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   6.6  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +3

Query: 324 CEPCNRTCENPFPVCPAQCARGCFCKDGLVRDKDGKCVELEQCSNLKHLKLG 479
           CE  ++  E  F +C AQ  +  FC+DG+++      ++L+  SNL+ +K G
Sbjct: 202 CEKSDKAIEKTF-LC-AQLFK-TFCEDGVLQTFQPGFIQLDIASNLQEIKKG 250


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
 Frame = +3

Query: 84  CRANERFLECGCRKTCRNPAPNCRAMCITGCFCEEGQVNNDNGVCVNLADCPQAASAYKL 263
           C ANE  ++  C +      P C  +C     C   Q N     C +     Q   A + 
Sbjct: 511 CTANE--VQVTCEQLQNGFIPTCERLCTILLSCGRHQCNKK---CCSGYSKAQTRLARRP 565

Query: 264 QTTEPRFDGGKCPQNEEYKFCEPCNR--TCENPFPVCPAQCARG 389
           +  + R+        EE+    PCN+  +C N F  C   C RG
Sbjct: 566 KGAKLRYHLLTEEFEEEHICFRPCNKKLSCGNHF--CQHMCHRG 607



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
 Frame = +3

Query: 120 RKTCRNPAPNCRAMC--ITGC--FCEEGQVNNDNGVCVNLADCPQAASAYKLQTTEPRFD 287
           RK+C +P P C  +C  +  C   C+        G C      P   +A ++Q T  +  
Sbjct: 465 RKSCSDPIPTCENICGKLLSCGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQ 524

Query: 288 GGKCPQNEE----YKFC--EPCNRTCENPFPVCPAQCAR 386
            G  P  E        C    CN+ C + +     + AR
Sbjct: 525 NGFIPTCERLCTILLSCGRHQCNKKCCSGYSKAQTRLAR 563



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 559 KTCSNPNPVCNQTCQRGCFCQEGYVKSVH-GSC 654
           K+CS+P P C   C +   C        H GSC
Sbjct: 466 KSCSDPIPTCENICGKLLSCGHRCKYKCHLGSC 498



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +1

Query: 496 QSLPASTAVPIKCT----RKCGTCDKTCSNPNPVCNQTCQRGCFCQE 624
           + +P    + + C     RK  TCD +  NP+P    +C   C  Q+
Sbjct: 754 ERIPCKAPLEVSCECGRIRKKVTCDASYDNPDPQHKVSCTLECSQQQ 800


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +1

Query: 241 KPLPHTSCRQQSHASMEGNALKT-RSTNSASPVTGLARIRSRCVQRS---APEDVS 396
           KP+P T  +  SHA +  N   T R+    S     ++  SR V++S   AP D S
Sbjct: 129 KPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTSRGVRKSKAGAPSDPS 184


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -2

Query: 403 SLQKHPRAHCAGHTGNGFSQVLLQGSQNLYSSF*GHFPPSKRGSVVCSLYAEAA*GQSAK 224
           S Q     +C  +   GF  V++QGS + Y  F   F   ++   VCS+  +    Q A+
Sbjct: 493 SAQGKQLRYCGNNAAEGFDDVVIQGSLSDY-KFACFFTKGEKVVGVCSIMKDPVVSQCAR 551


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 481 SPSLRCFKFEHCSNSTHFPSLSLTRPSLQKHPRAHCAGHTGN 356
           S   R    E CS+  + P L+L  P   + P    AGHT +
Sbjct: 270 SEHARSVASETCSSDPNNPKLNLKAPVFSEAPIREYAGHTAD 311


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +1

Query: 265 RQQSHASMEGNA-LKTRSTNSASPVTGLARIRSRCVQR------SAPEDVSVKTVW*GTK 423
           R++S  ++ G++   TRST S +P+T L  +R   + R        P+++  +  W G K
Sbjct: 620 RKKSKYNLPGSSGFMTRSTKSTNPMTPLNWLRGISMGRLGNADWEVPQNLGEELSWIGQK 679

Query: 424 TENV 435
             NV
Sbjct: 680 YSNV 683


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 219 VNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPVCPAQ 377
           ++LAD       Y +  T     G   P+N +Y    P N++  +  P+CP +
Sbjct: 123 IDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS-SHYHPMCPIE 174


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 436 WNWNNAQT*NILSLEKTTNSQSLPASTAVPIKC 534
           W   NA T  +   EK +   SLP+    PI C
Sbjct: 199 WRLANATTLLLRKAEKDSRGHSLPSVLTQPINC 231


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 3   IMSSKSIFICLSLCYIVNEVYG-QVATLC 86
           +M SK ++    LC I+ E Y  +V+ LC
Sbjct: 34  VMQSKGLYSMEELCSIIQEAYAPRVSVLC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,049
Number of Sequences: 5004
Number of extensions: 70372
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)