Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3689
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0382 + 2995263-2995673 31 0.97
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 31 1.3
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 30 1.7
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 30 1.7
02_05_0105 + 25874155-25874495,25874586-25874615,25875327-258754... 30 2.2
04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738 29 3.0
01_06_0329 + 28515740-28516526,28516597-28516631 29 3.0
01_06_0326 - 28495621-28495655,28495726-28496512 29 3.0
03_02_0500 - 8915300-8915349,8915567-8915717,8916308-8916516,891... 29 3.9
02_05_0399 + 28658667-28658922,28659287-28659443,28659527-286597... 29 3.9
06_02_0175 - 12624608-12625297 28 6.9
12_01_0197 + 1456296-1456668,1456930-1458746 28 9.1
04_01_0528 - 6917414-6919849 28 9.1
01_05_0282 - 20347915-20348874,20348968-20349012,20349568-203498... 28 9.1
>12_01_0382 + 2995263-2995673
Length = 136
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 526 IKCTRKCGTCDKTCSNPNP 582
+ C KCGTC CS+P P
Sbjct: 43 VLCVSKCGTCPTVCSSPPP 61
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 330 PCNRTCENPFPVCPAQCARGCF-CK--DGLVRDKD 425
P R CE+P P C + A GC C+ + L+RD D
Sbjct: 40 PSPRHCESPCPACRGRVASGCLACRRWEHLLRDGD 74
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 279 RFDGGKCPQNEEYKFCEPCNR 341
R+ GK P + EYKF EPC +
Sbjct: 462 RYIAGKVPAHVEYKFLEPCRK 482
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 141 APNCRAMCITGCFCEEGQVNNDNGVC 218
A +C+A C++ CFC ++ ++G C
Sbjct: 363 AADCQAACMSDCFCVAALLDTNDGTC 388
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Frame = +3
Query: 222 NLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENPFPV-CPAQCARGCFC 398
+L D AA + GG+ P PC C A C CFC
Sbjct: 317 DLIDAGDAAGGCTASSGAGECTGGREPTLNVSWADTPCGVLAAGTSAADCQAACMSDCFC 376
Query: 399 KDGLVRDKDGKCVELEQCSNLKHLKLGENY 488
L+ DG C +Q L++ + G Y
Sbjct: 377 VAALLDTNDGTCT--KQQLPLRYGRAGGGY 404
>02_05_0105 +
25874155-25874495,25874586-25874615,25875327-25875433,
25875884-25875918,25876310-25876438,25877103-25877294
Length = 277
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 238 LKPLPHTSCRQQSHASMEGNALKTRSTNSAS 330
L+ LPH SC+ S +GN+L T + +A+
Sbjct: 30 LRRLPHVSCQANRGGSRDGNSLSTSAAAAAA 60
>04_03_0603 - 17898310-17899457,17899658-17899747,17900853-17901738
Length = 707
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 201 NDNGVCVNLADCPQAASAYKLQTTEPRFDGGKCPQNEEYKFCEPCNRTCENP--FPVCPA 374
+D+ VC+N + A SAY ++ + G P + CE N CE+P +P C
Sbjct: 258 SDHSVCLNYSS--GAKSAYMCNCSKG-YHGN--PYLQGSNGCEDINE-CEHPESYP-CYG 310
Query: 375 QCAR-----GCFCKDGLV 413
+C CFC+DG+V
Sbjct: 311 ECHNKDGGFDCFCRDGVV 328
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 541 KCGTCDKT---CSNPNPVCNQTCQRGCFCQEGYVKS 639
KCG C++T C + + T CFC EG KS
Sbjct: 225 KCGKCERTKGWCGYRHNETSTTMDFTCFCDEGPTKS 260
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 541 KCGTCDKT---CSNPNPVCNQTCQRGCFCQEGYVKS 639
KCG C++T C + + T CFC EG KS
Sbjct: 225 KCGKCERTKGWCGYRHNETSTTMDFTCFCDEGPTKS 260
>03_02_0500 -
8915300-8915349,8915567-8915717,8916308-8916516,
8916592-8916808,8917515-8917722,8917839-8917939
Length = 311
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -3
Query: 732 FKNTSVCEYRTYCSVYEPSGQSSRFHAASVNRFNIALLAEASSLTGLVAHRVRITAGFVT 553
FK+ V +Y T C + + F A V+R + + E ++ LVA + ++T
Sbjct: 230 FKSEHVVKYSTNCQ--DTLLANKDFEGAVVSRTPLRRVGEPEEVSSLVAFLCMPGSSYIT 287
Query: 552 GATLS 538
G T+S
Sbjct: 288 GQTIS 292
>02_05_0399 +
28658667-28658922,28659287-28659443,28659527-28659746,
28660549-28660602,28660671-28660750,28661269-28661351,
28661385-28661546,28661667-28662071,28662151-28662503,
28662590-28662835,28663158-28663481,28664110-28664154
Length = 794
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +1
Query: 526 IKCTRKCGTCDKTCSNPNPVCNQTCQRGCFCQEGYVKSVHGSC 654
I T CG C + C + +CN C C E ++ SC
Sbjct: 441 IDATVLCGICRRDCYVAHIMCNCRIDAICLCHEEEIRRCPCSC 483
>06_02_0175 - 12624608-12625297
Length = 229
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 312 EYKFCEPCNRTCENPFPVCPAQCARGCF 395
EY C C VCP QC CF
Sbjct: 189 EYARCTAATGRCRGALLVCPMQCEGPCF 216
>12_01_0197 + 1456296-1456668,1456930-1458746
Length = 729
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 150 CRAMCITGCFCEEGQVNNDNGVC 218
C CI+ C C+E Q NG C
Sbjct: 285 CWNTCISDCTCKEFQYQEGNGTC 307
>04_01_0528 - 6917414-6919849
Length = 811
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +3
Query: 150 CRAMCITGCFCEEGQVNNDNGVC 218
CR +C+ CFC N + C
Sbjct: 389 CRRLCVIDCFCSVAVFNKPSNTC 411
>01_05_0282 -
20347915-20348874,20348968-20349012,20349568-20349816,
20350393-20350581,20351051-20351155,20351165-20351488,
20351493-20351555
Length = 644
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 523 PIKCTRKCGTCDKTCSNPNPVCNQTCQRGCFCQEGYVKSVHGSCV 657
P+ T C KTCS +CN++ + G +HG CV
Sbjct: 401 PVPSTSTGSWCCKTCST---ICNESAEVGMALVHYEPNRLHGHCV 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,300,467
Number of Sequences: 37544
Number of extensions: 525875
Number of successful extensions: 1739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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