Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3686
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 27 1.0
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 27 1.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 1.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 1.8
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 25 2.4
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 3.2
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 25 3.2
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 4.2
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 24 5.5
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 24 5.5
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 24 7.3
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 24 7.3
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 24 7.3
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 24 7.3
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 23 9.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 23 9.6
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 23 9.6
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 1.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 73 RPRGGAACLVVVLTAGTPLL*PGFDPGRR 159
RP GGA C+ +++ P++ F+PG R
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 1.0
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 236 RADRGPKEF-RAHPLNDSPALLRPASDLRPGSKPG-HSRGVPAVNTTTRHAAPPRGRPTD 63
R P+E+ R PL + RP +L+P S ++ P+ TTT ++ P+ P
Sbjct: 219 RVREEPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTT--SSKPKRDPFG 276
Query: 62 GSSRR*STSV 33
G+ +TSV
Sbjct: 277 GAKPVDNTSV 286
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 257 LNDLQVLRADRGPKEFRAHPLNDSPALLRPASDLRPGSKPGHSR 126
++DL L DR +RA P + P+S P SR
Sbjct: 29 IDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESR 72
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 152 PGSKPGHSRGVPAVNTTTRHAAP 84
P +PG+S G+ A+NT T P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 152 PGSKPGHSRGVPAVNTTTRHAAP 84
P +PG+S G+ A+NT T P
Sbjct: 1621 PPPQPGNSSGMSAMNTNTTSTTP 1643
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 2.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 125 GVPAVNTTT-RHAAPPRGRPTDGSSRR*STSVSAIR 21
G+P +T+ +H PPR RP SR+ S +R
Sbjct: 189 GLPEGGSTSGKHLTPPRYRPNFSPSRKAENVKSPVR 224
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 3.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -1
Query: 209 RAHPLNDSPALLRPASDLRPGSKPGHSRGVPAVNTTTRHAAPPRGRPTDGSSRR 48
R PLN SP+ L P S+ + G+ + T PP R T G + R
Sbjct: 337 RRSPLN-SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTR 389
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.0 bits (52), Expect = 3.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 10/52 (19%)
Frame = +3
Query: 189 VV*WVGPKFLGPAVCSQHLQIV----------ESHIPRAPPRRGDLVGGSAL 314
VV + KFL P+V S L+++ H+P +P +R LV GSA+
Sbjct: 16 VVMSLSKKFLKPSVASNQLRLLFTAAERKVNYPGHVPLSPLQRIFLVAGSAI 67
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 200 PLNDSPALLRPASDLRPGSKPGHSRGVPA 114
P N++PA ++ RP S P S VPA
Sbjct: 258 PANETPASSSSSAKARPVSVPDMSSPVPA 286
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 158 LRPGSKPGHSRGVPAVNTTTRHAAPP 81
L S+PGH RGV V + H P
Sbjct: 118 LEGASRPGHFRGVTTVVSKLFHIVNP 143
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 24.2 bits (50), Expect = 5.5
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Frame = -1
Query: 227 RGPKEFRAHPLNDSPALLRPASDLRPGSKP-------GHSRGV--PAVNTTTRHAAPPRG 75
R PK +DSP + P S+ +P + P G+S V P +TTR +
Sbjct: 195 RSPKVGFNAKSDDSPVVKSPGSNDKPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNV 254
Query: 74 RPTDGSSRR*STSVSAIR 21
GS + STS S ++
Sbjct: 255 TNASGSISKNSTSPSKVK 272
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.8 bits (49), Expect = 7.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 223 GPRNLGPTH*TTPLHSYARRPISVRGQNPVTVGGFPRSTLQPDTRRHPEDARP-TGRRG 50
GPRN + + LH+ P+++RG G PR+ D H + P GR G
Sbjct: 489 GPRNAPRNNSSNNLHAQGGMPMNMRGPR-----GAPRNNSSGDL--HIQSGMPMNGRNG 540
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 281 RGRARYVRLNDLQVLRADRGPKEF 210
R ++ VR N L+V++ GPK+F
Sbjct: 126 RPLSKTVRFNVLRVVKHTEGPKQF 149
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 70 GRPRGGAACLVVVLTAGTPLL*PGFDPGRRSDAG 171
GRP G C + L+ G+ + P PG + G
Sbjct: 219 GRPENGGNCDIKNLSRGSKVFLPVHVPGAKLSIG 252
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 281 RGRARYVRLNDLQVLRADRGPKEF 210
R ++ VR N L+V++ GPK+F
Sbjct: 126 RPLSKTVRFNVLRVVKHTEGPKQF 149
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 139 PVTVGGFPRSTLQPDTRRHP 80
P+TVGG R PD HP
Sbjct: 318 PLTVGGGIRDVSDPDGTFHP 337
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 23.4 bits (48), Expect = 9.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 1 PGRPEGRRIAETDVDYRLDDPSVGRPRGGAACLVVVL 111
PG+ TD D R D P G +G +VVL
Sbjct: 130 PGKHSKNMQVVTDSDVRKDPPRKGWKKGPYGRAIVVL 166
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 157 SVRGQNPVTVGGFPRSTLQPDTRRHPEDARP 65
+V Q PV G R+T+QP RR +DA P
Sbjct: 532 AVAMQGPVYKG---RNTMQPFQRRLNDDASP 559
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,365
Number of Sequences: 5004
Number of extensions: 29045
Number of successful extensions: 77
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -