Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3685
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    54   3e-08
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    47   2e-06
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    29   0.63 
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    28   1.4  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   2.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   5.8  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   5.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   7.7  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   7.7  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.7  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   7.7  

>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 2/168 (1%)
 Frame = +3

Query: 108 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVN 287
           D P  + VI+VGT +  SI++AA S   + VLH+D +  YG +  S     L++  +++ 
Sbjct: 2   DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61

Query: 288 SDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFNIDTTPKLL 467
                Q    N S K  +++   Q              +   D   + +   I   P+ +
Sbjct: 62  KVDSSQILNDNGSHKSPLKRFEVQ--------------FLNKDLIPKNKGSVIQFHPQEI 107

Query: 468 FSRGPLVELLISSNIARYAEFRCVT--RVLTWLNDQLMPVPCSRADVF 605
           F+   LV+LL  + I +Y   +     R+LT  N++ + VP SRAD+F
Sbjct: 108 FASSELVKLLSETKIYKYLLLKPARSFRLLT-SNEEWIKVPESRADIF 154


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = +3

Query: 120 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 299
           ++ VIV+GTG+ E +++   S  GK VLH+D +D+YG   AS N   L    +     P+
Sbjct: 4   EYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPE 63



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 432 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVP 584
           R + +D  PK L + G L  +LI +++ RY EF+ +     + + ++  VP
Sbjct: 69  RDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = +3

Query: 291 DPDRQKQVYNLSEKWFIEKESAQGE--TTDENKGEPRKVWSQADFAAEYRKFNIDTTPKL 464
           DP  Q +V     K  + K S      T ++  GEP+        A+ Y  F +   PKL
Sbjct: 302 DPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKL 361

Query: 465 LFSRGPLVELLISSNIARY 521
                 L+   I+   A Y
Sbjct: 362 SIESKDLIHRFITFIDALY 380


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 129 VIVVGTGMVESIVAAACSRIG-KNVLHMDSSDHYGGLWASYNFEGLQK 269
           V+V+G G      AAA SR+G K  L   S D+ G +  +  F G+ K
Sbjct: 19  VVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGIGK 66


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 285 NSDPDRQKQVYNLSEKWFIEKE-SAQGETTDENKGEPRKVWSQADFAAEYR 434
           NSDP  + + Y     WF   +  A     D+  GE    WS  D    Y+
Sbjct: 240 NSDPQFRPK-YQAKSSWFAPDDPEASWGNLDDGWGETNGSWSSTDDTKHYK 289


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 322  YLKNGLLKRNLHKAKQLMKTKVNQEKYGAKPILQRSIGNLTSIQLQSCC 468
            +L +GLL   LH+   +   +   EK   K +L  SI  L+S+Q    C
Sbjct: 973  WLSHGLLTLILHELNWVELPEWQLEKSNTKNVLVTSIFLLSSLQYLGIC 1021


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 224 MITRVHVEDILAYPTASSSHYGLDHARSHHDDL 126
           +I  ++V  I+  PTA++  YGLD +  H  ++
Sbjct: 161 LIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 204 HMDSSDHYG-GLWASYNFEGLQKFIKEVNSDPDRQKQVYNLSEKWF 338
           H+  +D  G  LW S + + ++ +I   N+DP  Q  +Y +S+  +
Sbjct: 97  HLCEADQLGLYLWNSTSAKSIRSYIIPTNADP--QNIIYEISQSGY 140


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 225  YGGLWASYNFEGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENK 383
            YG   +    +G+  F    +SDP R   V++ + +W    E +Q +  DE K
Sbjct: 859  YGAGLSYSGIDGVLSFFTYRDSDPIRSLSVFDEASEWATTHEFSQRD-IDEAK 910


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 123 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEG 260
           FQV ++G G +  + A   S+ G  V   D  ++Y  + A+Y   G
Sbjct: 5   FQVGIIGFGDMGRLYAEYISKAGWRVNVCDRPENYESIQATYGNGG 50


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 264 QKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQADFAAEYRKFN 443
           Q F++E   D D          +W IE E  + E     K +P    S  DF+ E     
Sbjct: 202 QPFVEEGEKDYDEAAAAKAGKSEWEIEFEKFKLE----QKKQPDVASSDGDFSDEPESEE 257

Query: 444 IDTTPKLLFS 473
            D  P+L+ S
Sbjct: 258 RDEVPELVSS 267


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 126 QVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGG 233
           Q IV+G G+           +G NVL +D +  +GG
Sbjct: 40  QAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,045
Number of Sequences: 5004
Number of extensions: 60118
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)