Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3685
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 108 4e-24
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 108 4e-24
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 49 2e-13
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 49 2e-13
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 49 2e-13
Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical pr... 37 0.012
AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical ... 33 0.25
U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical pr... 31 1.0
U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical pr... 30 1.8
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 29 2.3
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 29 2.3
AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical ... 29 4.1
Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF014939-7|AAB63929.2| 343|Caenorhabditis elegans Serpentine re... 28 5.4
Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical ... 27 9.4
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 108 bits (259), Expect = 4e-24
Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 15/184 (8%)
Frame = +3
Query: 99 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 266
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 267 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 428
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 429 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLND-----QLMPVPCSR 593
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
Query: 594 ADVF 605
++F
Sbjct: 181 GEIF 184
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 108 bits (259), Expect = 4e-24
Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 15/184 (8%)
Frame = +3
Query: 99 MDEDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNF----EGLQ 266
MDE P V+V+GTG+ E+I+A+AC+R G +VLH+D +++YGG W+S+ E +
Sbjct: 1 MDEKLPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFTMSMVHEVTE 60
Query: 267 KFIKEVNSDPDRQKQVYNLSEKWFIE------KESAQGETTDENKGEPRKVWSQADFAAE 428
+K+++S + + IE E+ + K E + + +Q + A++
Sbjct: 61 NQVKKLDSSEISKLSELLTENEQLIELGNREIVENIEMTWIPRGKDEEKPMKTQLEEASQ 120
Query: 429 YRKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLND-----QLMPVPCSR 593
R+F+ID PK+L S+G +V+ L S ++ YAEF+ V R L L PVPCS+
Sbjct: 121 MRRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSK 180
Query: 594 ADVF 605
++F
Sbjct: 181 GEIF 184
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 48.8 bits (111), Expect(2) = 2e-13
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 611
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 612 -XSGRYPSRK 638
G + R+
Sbjct: 131 SLMGMFEKRR 140
Score = 44.4 bits (100), Expect(2) = 2e-13
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 120 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 299
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 300 RQKQVYNLSEKWFIE 344
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 48.8 bits (111), Expect(2) = 2e-13
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 611
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 612 -XSGRYPSRK 638
G + R+
Sbjct: 131 SLMGMFEKRR 140
Score = 44.4 bits (100), Expect(2) = 2e-13
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 120 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 299
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 300 RQKQVYNLSEKWFIE 344
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 48.8 bits (111), Expect(2) = 2e-13
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 432 RKFNIDTTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDQLMPVPCSRADVFAT 611
R +N+D PK L + GPLV+LLI + + RY EF+ + ++ VP + AT
Sbjct: 71 RDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKVPADEMEALAT 130
Query: 612 -XSGRYPSRK 638
G + R+
Sbjct: 131 SLMGMFEKRR 140
Score = 44.4 bits (100), Expect(2) = 2e-13
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +3
Query: 120 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 299
++ IV+GTG+ E I++ S GK VLH+D +++YGG S + L++ ++ +
Sbjct: 4 EYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGG--ESASLTPLEQLYEKFHGPQA 61
Query: 300 RQKQVYNLSEKWFIE 344
+ +Q W ++
Sbjct: 62 KPQQEMGRGRDWNVD 76
>Z66512-1|CAA91322.1| 638|Caenorhabditis elegans Hypothetical
protein F52H3.2 protein.
Length = 638
Score = 37.1 bits (82), Expect = 0.012
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Frame = +3
Query: 90 TRMMDEDFPTDFQVIVVGTGMVESIVAAACSRIGKN-VLHMDSSDHYGGLWASYNFEGLQ 266
TR++ F TD VIV+G G AAA +R G N VL + + G + + +F G+
Sbjct: 6 TRLLRRCFQTDVDVIVIGGGHAGCESAAAAARCGSNTVLVTQNKNTIGEMSCNPSFGGIG 65
Query: 267 K--FIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGE-PRKVWSQADFAAEYRK 437
K I+EV++ ++ + S + AQG + + RK++ +
Sbjct: 66 KGHLIREVDALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYK------TQMQ 119
Query: 438 FNIDTTPKLLFSRGPLVELLISS 506
I++T +L G + ELL+ +
Sbjct: 120 NEINSTKRLEILEGEVAELLVEN 142
>AC024843-3|AAF60838.1| 110|Caenorhabditis elegans Hypothetical
protein Y61A9LA.7 protein.
Length = 110
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 255 EGLQKFIKEVNSDPDRQKQVYNLSEKWFIEKESAQGETTDENKGEPRKVWSQAD-FAAEY 431
E + +++ ++ S PDR +++ +++ ++ + + +K EP+KV+ D F ++Y
Sbjct: 35 ESMDEYLAQILS-PDRLQELKTAHDEFEAQRRGKRAAISASDKPEPKKVFDIIDQFTSDY 93
Query: 432 RKF 440
+KF
Sbjct: 94 QKF 96
>U23529-6|AAL32208.1| 384|Caenorhabditis elegans Hypothetical
protein C15B12.1 protein.
Length = 384
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 117 TDFQVIVVGTGMVESIVAAACSRIGKNVLHMD 212
TD+ V+VVG G+ S A C +IG L ++
Sbjct: 3 TDYDVVVVGAGIFGSCTAYNCQKIGLKTLLLE 34
>U23529-5|AAL32212.2| 385|Caenorhabditis elegans Hypothetical
protein C15B12.8 protein.
Length = 385
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 123 FQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPD 299
+ VIVVG G+ S A C R+G L + + Y ++ + G + I+ ++DP+
Sbjct: 6 YDVIVVGAGIFGSCTAYHCQRLGLRTLLL---EQYSLGHSNGSSHGKSRIIRYAHTDPE 61
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 430 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 281
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 430 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFT 281
+S+++S W F S +F V CA S+ F DK + F +S S ++
Sbjct: 485 HSSSESLWAPLFFLSAVFCLFVLVCAKEQSVLCFDDKRRSSFGMSRSQYS 534
>AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical
protein ZK380.2 protein.
Length = 495
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 334 GLLKRNLHKAKQLMKTKVNQEKYGAKPILQRSIGNLTSIQLQSCCSL 474
GLL+ LH A+ + K N E Y + R I NL +I+++ +L
Sbjct: 208 GLLETQLHAAEAINVAKANHELYKCQE-KDRRIDNLENIEIRFVANL 253
>Z49937-1|CAA90184.2| 670|Caenorhabditis elegans Hypothetical
protein F14F3.2 protein.
Length = 670
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 198 VLHMDSSDHYGGLWASYNFEGLQKFIKEVNSDPDRQKQ--VYNLSEKWFIEKESAQGETT 371
++H ++ + +W S +EG KF K + DP K+ V EK + + + E
Sbjct: 70 LVHALNTSNTNMIWESALYEGSTKFQKPMAQDPSHIKEQFVKEKYEKLTFQPKRGKDEDL 129
Query: 372 DENKGEPRKVWSQADFA 422
+ + +++DFA
Sbjct: 130 ENSLNRQLIACARSDFA 146
>AF014939-7|AAB63929.2| 343|Caenorhabditis elegans Serpentine
receptor, class h protein192 protein.
Length = 343
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 371 SCFALCRFLFNKPFFR*VVHLFLSIRITVHFF 276
SC A + N FF +H+ I I +HFF
Sbjct: 4 SCIAKANYFDNPEFFLLCMHIVTVISIPIHFF 35
>Z72508-7|CAA96642.1| 336|Caenorhabditis elegans Hypothetical
protein F28H7.11 protein.
Length = 336
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 401 YFSWFTFVFISCFALCRFLFNKPF 330
YF W + FALC FL N F
Sbjct: 2 YFDWAQYFIPKFFALCSFLINPLF 25
>AF098989-3|AAK18953.2| 569|Caenorhabditis elegans Hypothetical
protein F47G6.2 protein.
Length = 569
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 298 IDKNKCTTYLKNGLLKRNLHKAKQLMKTKVN 390
+ K +CTT L NG R L K Q + K++
Sbjct: 304 VSKYRCTTLLSNGAALRLLLKISQTQRVKLS 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,453
Number of Sequences: 27780
Number of extensions: 344279
Number of successful extensions: 1167
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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