Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3684
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0195 - 23488490-23488891,23489016-23489243,23489348-234894...    30   2.1  
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653...    29   2.8  
06_02_0363 - 15172528-15173224,15174564-15174856                       29   3.7  

>04_04_0195 -
           23488490-23488891,23489016-23489243,23489348-23489481,
           23489685-23489899,23490049-23490142,23490293-23490526,
           23490643-23490736
          Length = 466

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 304 YYSLIYEYVHKEFIKHFPFSDVLSRSKTIRFSLYLKMRFNKLRIC 170
           Y   IY++  + F + +P S  ++   T++  L    R N LR+C
Sbjct: 335 YSQPIYQFADRFFAERYPASRFVNDFHTVKLPLLPPCRVNLLRVC 379


>05_04_0141 -
           18364065-18364176,18364722-18364948,18365183-18365390,
           18365497-18365706,18366078-18366180,18366214-18366325,
           18367061-18367204,18367835-18367936,18368081-18368186,
           18368301-18368335
          Length = 452

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 386 EPIDIYNVNAPPNLRYKFLGLNIVTTATPPFKPKRTT 496
           EP  +  + APPN+  K L  N+VT A   F P RTT
Sbjct: 144 EPNILKEMIAPPNIVSKML--NVVTDAAASFVPWRTT 178


>06_02_0363 - 15172528-15173224,15174564-15174856
          Length = 329

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 464 ATPPFKPKRTTASSQK*AGWVVPYACGLIRGPTT 565
           A+PP  P+R+T +S +  G+ +P   G++  P T
Sbjct: 215 ASPPLLPRRSTPTSPRTQGFCLPRCPGVLCRPAT 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,888
Number of Sequences: 37544
Number of extensions: 334163
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)