Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3683
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    29   0.94 
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    28   1.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   3.8  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.8  

>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 636 EIKVLTMPSQYIFENLMYGS*TY*GVS*KV 725
           ++K+L  P  YIF    YG  TY G S K+
Sbjct: 116 QVKILKNPGNYIFGRTEYGKRTYSGNSTKI 145


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 108 KIQFRRSTEKGHTIDADDDEVN-DAISCVVHWFRINNLLLNSKKTKC 245
           K QF R  +    +D   ++++ D+    V W + N ++++  KTKC
Sbjct: 113 KHQFDRKVQTYKNLDTVWEKIHHDSTGKPVSWSQYNTIIVDDSKTKC 159


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 677 FKNVLGWHSENFNFFKFL 624
           F+++L WH+E FN +  L
Sbjct: 198 FRSILSWHNETFNIWTHL 215


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +3

Query: 486 YFSYFHSVMSYGILLWGNAADVETIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPS 662
           + +Y   V    I LWGNA D+    +L   +   + N+  ++ + E  K I V   P+
Sbjct: 175 HIAYMVFVEMAQISLWGNATDLS---LLTNLSYEELQNLQGQKVVEESQKNILVNDFPT 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,580
Number of Sequences: 5004
Number of extensions: 54913
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)