Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3683
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    30   2.3  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     29   5.2  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    28   6.9  
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314...    28   9.2  

>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 689  WFVNILRSFLKSRTYLIEI 745
            W +NILR FLK + YLI I
Sbjct: 1324 WLINILRVFLKDKRYLIVI 1342


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 120 RRSTEKGHTIDADDDE-VNDAISCVVHW 200
           RR  +KG  ID+ DDE ++DA+ C + W
Sbjct: 533 RRKQKKG--IDSSDDEMIDDAVDCGIDW 558


>02_05_0484 - 29401195-29401404,29401572-29401755,29401866-29403973,
            29404320-29404403,29404507-29404777,29404864-29405117,
            29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 31   VGIGSSRYTKLLRVK*TEEGE--ETHSRKYSLGGPRKKVTQSMPMMTK 168
            V +G +R  +      +E+ E  E HS   SLGG R+K  Q+   +T+
Sbjct: 964  VTVGGTRKRRFAGATISEQDEDSEAHSESVSLGGQRRKRRQTAAAVTQ 1011


>06_01_0446 -
           3147007-3147111,3147215-3147367,3147445-3147497,
           3147670-3147988,3148754-3148892,3149141-3149222,
           3149711-3149789,3150135-3150314,3150811-3151070,
           3151192-3151294,3151469-3151609,3151797-3151870,
           3153536-3153635,3154108-3154167,3154381-3154428,
           3154519-3154610,3155023-3155071,3155810-3155879,
           3156408-3156505,3157288-3157347
          Length = 754

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 543 ADVETIFILQKRAIRAIYNMHSRESLREKFKEI 641
           AD+E I +  K A RA+Y++H + S RE  K++
Sbjct: 113 ADMEFISMGMKVATRAVYSLH-KTSTREHIKKV 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,175
Number of Sequences: 37544
Number of extensions: 315850
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)