Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3682
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.6  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    26   6.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   8.3  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +3

Query: 519 STLFSLCLNSF*KVQFVYSAIKHRFLIIPNESSASLSSF*TWCNSGKTPLYFSSALHSRS 698
           STL S  ++S     F  S       I  + SS S SSF +  +S K+   FSS + S S
Sbjct: 319 STLSSSSMSS--SSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSS 376

Query: 699 SLIDYTRT 722
           S    T T
Sbjct: 377 STSSSTLT 384


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 395 LSSYHRSQMSVTRGAKLRRSF--QTSFKSINSLPGYSVKPLNLINFIFLMSKFILKSAIC 568
           L SYH    + T+ A L+++    +SFKS  +LP  + + ++    +   +  I+K    
Sbjct: 21  LISYH--VRASTQNALLKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQISM 78

Query: 569 LQCYKTSVLDNSE 607
           ++ Y +  ++N E
Sbjct: 79  VRSYSSGDVENPE 91


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 172 TD*LQLLMNLIENNFMYFNVQ*VYI*FNLPKEYPF 68
           TD ++LLM+  E   +  N+Q  Y+ F+ P E P+
Sbjct: 10  TDVMKLLMSDYEVTLVNDNMQEFYVRFHGPSETPY 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,658
Number of Sequences: 5004
Number of extensions: 51111
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)