Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3682
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348...    28   8.6  

>07_01_0460 +
           3486040-3486758,3486804-3486876,3487067-3487132,
           3488090-3488251,3488427-3488457,3488767-3489206
          Length = 496

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 115 VQ*VYI*FNLPKEYPFYKIRLMLQVSFGQFFFL 17
           +Q +Y+    PK YPF    LM+ + F QF  L
Sbjct: 440 LQVLYLQIEPPKRYPFLFDALMMFICFSQFVIL 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,450
Number of Sequences: 37544
Number of extensions: 261060
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)