Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3680
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0393 - 18550972-18551562,18551864-18552005,18552164-185523...    26   7.4  
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811...    26   7.4  
12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544...    26   9.8  
04_01_0012 - 210670-210759,210939-211008,211138-211235,211318-21...    26   9.8  
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848...    26   9.8  
01_05_0118 + 18335065-18335553                                         26   9.8  

>12_02_0393 -
           18550972-18551562,18551864-18552005,18552164-18552382,
           18552733-18552828,18552923-18553035,18553299-18553510,
           18553603-18553700,18554283-18554314,18554984-18555068,
           18555853-18555914
          Length = 549

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 204 DTNPRSIEALKENIRREMTSISAVTCRAVIDNFRRRL-QECRDR 76
           +T+P SIEA KE + R+  S S V  R+++ +    + + C+DR
Sbjct: 457 NTSPESIEAAKEIVNRDAES-SMVEMRSLVFSEGGPIPRPCKDR 499


>09_02_0374 -
           8112021-8112820,8112908-8113152,8113256-8113455,
           8113584-8114235,8114369-8114661
          Length = 729

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 231 TKKIHRGQIWTTWRPGNVSSLRD 299
           T +    Q+WT W PG+  SL D
Sbjct: 571 TSQKDTSQMWTVWNPGSEFSLCD 593


>12_02_0332 +
           17653413-17653581,17654045-17654139,17654292-17654444,
           17655013-17655117,17655197-17655268,17655514-17655626,
           17655727-17655861,17655970-17656038,17656154-17656241,
           17656348-17656419,17656505-17656605,17656724-17656841,
           17656933-17656992,17657593-17657703,17659044-17659154
          Length = 523

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +2

Query: 98  RRLKLSMTARHVTAEMLVISLRMFSFRASIDRG-FVSY-------TLALR*PHKKNPSGS 253
           R L   MT +  T + +++  R    +   DRG FV +        + +  P KKNP+ +
Sbjct: 283 RNLMSKMTIQEPTFDRMIVVYRRAGTKTKPDRGIFVKHFKNIPMADMEIVLPEKKNPTLT 342

Query: 254 DLDYVE 271
            +D+V+
Sbjct: 343 PMDWVK 348


>04_01_0012 -
           210670-210759,210939-211008,211138-211235,211318-211427,
           211533-211683,212247-212391,212483-212749,212819-212957,
           213036-213270
          Length = 434

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 267 WRPGNVSSLRDNFARKKLTDNGHSSVRGV 353
           WR GN++S  +     K+TD+G   ++G+
Sbjct: 404 WR-GNIASAINTIQANKVTDDGSQGIQGL 431


>02_04_0179 +
           20682852-20684510,20684593-20684661,20684741-20684809,
           20686779-20688206
          Length = 1074

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 117 IDNFRRRLQECRDRNGLHLGDV 52
           ID  RR + +CRDR+  HL D+
Sbjct: 762 IDAPRRYVFQCRDRHACHLQDL 783


>01_05_0118 + 18335065-18335553
          Length = 162

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 244 IGVRSGLRGGQEMSPLLEI--TLPGK 315
           IG+R  LR GQ++ P  EI  T+ GK
Sbjct: 94  IGIRKDLRQGQQVPPRAEIGHTIQGK 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,947,006
Number of Sequences: 37544
Number of extensions: 160157
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)