Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3680
(353 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 40 4e-04
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 31 0.23
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 31 0.23
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 31 0.23
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 31 0.23
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p... 29 0.71
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor... 29 0.71
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ... 29 0.71
AF101305-4|AAR85910.1| 342|Caenorhabditis elegans Serpentine re... 28 2.2
Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical p... 27 5.0
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 26 6.6
U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical p... 26 8.7
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 26 8.7
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 26 8.7
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 26 8.7
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 26 8.7
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = -3
Query: 252 DPDGFFLWGYLKAKVYDTNPRSIEALKENIRREMTSISAVTCRAVIDNFRRRLQECRD 79
+P + +W L+AK R+I++LK+++++ + RA +D+F RRL+ R+
Sbjct: 345 NPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDSFPRRLEASRE 402
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 275 WPPRSPDLTPMDFFCGATLRLK 210
WPP SPDL PMD+ + L K
Sbjct: 337 WPPSSPDLNPMDYSVWSVLEAK 358
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 281 ISWPPRSPDLTPMDFFCGATLRLKY 207
+ WP RSPDL P++ G +R+ Y
Sbjct: 65 LDWPARSPDLNPIENLWGILVRIVY 89
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 281 ISWPPRSPDLTPMDFFCGATLRLKY 207
+ WP RSPDL P++ G +R+ Y
Sbjct: 253 LDWPARSPDLNPIENLWGILVRIVY 277
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 281 ISWPPRSPDLTPMDFFCGATLRLKY 207
+ WP RSPDL P++ G +R+ Y
Sbjct: 253 LDWPARSPDLNPIENLWGILVRIVY 277
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.23
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 281 ISWPPRSPDLTPMDFFCGATLRLKY 207
+ WP RSPDL P++ G +R+ Y
Sbjct: 383 LDWPARSPDLNPIENLWGILVRIVY 407
>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 213 KVYDTNPRSIEALKENIRREMTSISAVTCRAVIDNFR 103
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
transporting ATPase protein.
Length = 1238
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 213 KVYDTNPRSIEALKENIRREMTSISAVTCRAVIDNFR 103
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
protein Y76A2A.2 protein.
Length = 1238
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 213 KVYDTNPRSIEALKENIRREMTSISAVTCRAVIDNFR 103
KV P + A K IRR + SI +TC A ++N +
Sbjct: 113 KVLKKEPPTQMAEKPKIRRAIVSIEGMTCHACVNNIQ 149
>AF101305-4|AAR85910.1| 342|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 2 protein.
Length = 342
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +2
Query: 2 IFIYIKSLKNGNYFLKITSPKCN-----PLRSRHSCKRRLKLSMTARHVTAEMLVISLRM 166
+ + ++ + +G FL P N P RSR ++ KLS A VT +L + +
Sbjct: 68 VHVSVRIILHGKDFLNYVGPWQNGCELFPDRSRCDLRKLYKLSAFAIEVTPFVLTVERFI 127
Query: 167 FSFRAS 184
+FRAS
Sbjct: 128 ATFRAS 133
>Z82057-5|CAB04861.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 255 IWTTWRPGNVSSLRDNFARKKLTDN 329
I T PGN +L D+FAR +T N
Sbjct: 171 IHTKMNPGNRGALLDSFARAYITSN 195
>Z81142-11|CAB03512.3| 325|Caenorhabditis elegans Hypothetical
protein ZK1037.11 protein.
Length = 325
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 255 IWTTWRPGNVSSLRDNFARKKLTDN 329
I T PGN +L D+FAR +T N
Sbjct: 171 IHTKMNPGNRGALLDSFARAYITSN 195
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical protein
ZK337.1c protein.
Length = 1516
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 293 KRGDISWPPRSPDLTPMD 240
K G+ WPP SP L P D
Sbjct: 1473 KCGEDCWPPISPSLPPFD 1490
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical protein
ZK337.1b protein.
Length = 1501
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 293 KRGDISWPPRSPDLTPMD 240
K G+ WPP SP L P D
Sbjct: 1476 KCGEDCWPPISPSLPPFD 1493
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical protein
ZK337.1a protein.
Length = 1508
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 293 KRGDISWPPRSPDLTPMD 240
K G+ WPP SP L P D
Sbjct: 1465 KCGEDCWPPISPSLPPFD 1482
>U64843-13|AAF98228.1| 355|Caenorhabditis elegans Hypothetical
protein K06C4.8 protein.
Length = 355
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 65 CNPLRSRHSCKRRLKLSMTARHVTAEMLVISLRMFSFRASIDRGFVSYTLA 217
C PL+ + C ++ + + +L + R F F+A++ G + + LA
Sbjct: 132 CRPLQVQIWCTQKNTIRAMTCIIAISILFNAPRFFEFKANLITGVIGFGLA 182
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Frame = -1
Query: 305 KVISKRGDISW-----PPRSPDLTPMDF 237
K K D+ W PP SPDL P D+
Sbjct: 251 KTFQKLQDLGWTVLPHPPYSPDLAPTDY 278
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Frame = -1
Query: 305 KVISKRGDISW-----PPRSPDLTPMDF 237
K K D+ W PP SPDL P D+
Sbjct: 226 KTFQKLQDLGWTVLPHPPYSPDLAPTDY 253
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 340 LLCPLSVNFFLAKLSLREETFPGLHVVQI*PRWIFFVGLP 221
LLC ++ F+ K++L E P L + Q+ ++ F+G P
Sbjct: 528 LLCFMAHLKFVVKIALDESLVPSLMMSQLPNGYLKFIGEP 567
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Frame = -1
Query: 305 KVISKRGDISW-----PPRSPDLTPMDF 237
K K D+ W PP SPDL P D+
Sbjct: 251 KTFQKLQDLGWTVLPHPPYSPDLAPTDY 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,814,359
Number of Sequences: 27780
Number of extensions: 144752
Number of successful extensions: 418
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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