Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3679
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 134 7e-33
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 105 5e-24
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 104 9e-24
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 100 1e-22
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 95 5e-21
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 92 5e-20
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 89 5e-19
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 88 6e-19
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 69 4e-13
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 65 5e-12
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 61 8e-11
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 61 8e-11
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 61 1e-10
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 59 4e-10
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 57 1e-09
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 55 7e-09
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 52 7e-08
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 46 4e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 39 4e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 38 9e-04
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.31
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 29 0.31
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 0.71
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 1.6
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 2.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 5.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 5.0
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 5.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 5.0
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 6.7
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 6.7
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 134 bits (324), Expect = 7e-33
Identities = 70/95 (73%), Positives = 77/95 (81%), Gaps = 2/95 (2%)
Frame = +1
Query: 220 NGAPQTKVC-QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDD-TT 393
N AP+ V KLVLLG+SAVGKSSLVLRFVK QF +Y+ESTIGAAFLTQ + D+ T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 394 VKFEIWDTAGQERYHSLAPMYYRGAQSAIVVYDIT 498
VK EIWDTAGQERY SLAPMYYR A AIVVYDIT
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDIT 98
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 105 bits (251), Expect = 5e-24
Identities = 46/88 (52%), Positives = 64/88 (72%)
Frame = +1
Query: 250 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 429
FK VL+G+S VGKS+L++RF + +F+ +STIG F T+ I D+ +K +IWDTAGQE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQE 70
Query: 430 RYHSLAPMYYRGAQSAIVVYDITNQDTF 513
RY ++ YYRGA A++VYDIT Q +F
Sbjct: 71 RYRAITSAYYRGAVGALIVYDITKQSSF 98
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 104 bits (249), Expect = 9e-24
Identities = 46/89 (51%), Positives = 65/89 (73%)
Frame = +1
Query: 247 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 426
+FKLV LGE +VGK+SL+ RF+ QF ++TIG FL++ + +D TV+ ++WDTAGQ
Sbjct: 11 KFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 70
Query: 427 ERYHSLAPMYYRGAQSAIVVYDITNQDTF 513
ER+ SL P Y R + AI+VYDITN ++F
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSF 99
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 100 bits (240), Expect = 1e-22
Identities = 45/88 (51%), Positives = 60/88 (68%)
Frame = +1
Query: 250 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQE 429
FKL+L+G+S VGKS L+LRF + E STIG F + + TVK +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 430 RYHSLAPMYYRGAQSAIVVYDITNQDTF 513
R+ ++ YYRGA I+VYD+T+QD+F
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDVTDQDSF 96
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 95.1 bits (226), Expect = 5e-21
Identities = 40/87 (45%), Positives = 62/87 (71%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
K+++LGES VGK+S++ ++V +F + ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQER 69
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDTF 513
+ SL +YRGA ++VYD+ N +F
Sbjct: 70 FQSLGVAFYRGADCCVLVYDVNNSKSF 96
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 91.9 bits (218), Expect = 5e-20
Identities = 40/87 (45%), Positives = 60/87 (68%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
K+V+LG+S VGK+ L+ +FV +F ++TIGA FLT+ + DD V ++WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDTF 513
+ SL +YRGA ++VY++ N +F
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSF 96
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 88.6 bits (210), Expect = 5e-19
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRF----DDTTVKFEIWDTA 420
K+VL G S GKS L+ RFVK Q+ + T+G F ++ I +K +IWDTA
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 421 GQERYHSLAPMYYRGAQSAIVVYDITNQDTF 513
GQE++ S+A YYRGA A++VYD+TN+D+F
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKDSF 101
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 88.2 bits (209), Expect = 6e-19
Identities = 39/87 (44%), Positives = 58/87 (66%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
KL+L+G+S VGKS L+LRF + F +TIG F + I D +K +IWDTAGQER
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDTF 513
+ ++ YYRGA +++YD+T++ +F
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKKSF 97
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 68.9 bits (161), Expect = 4e-13
Identities = 27/86 (31%), Positives = 53/86 (61%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
K+ ++G+S++GK+SL++ +V+G F E T+G F+ + I +T + F IWD GQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDT 510
+ ++ PM A + + ++D++ + T
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKST 97
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 65.3 bits (152), Expect = 5e-12
Identities = 33/95 (34%), Positives = 53/95 (55%)
Frame = +1
Query: 229 PQTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEI 408
PQ V FKLVL+G+ GK++ V R + G+F + +T+G + + F +
Sbjct: 4 PQN-VPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNV 62
Query: 409 WDTAGQERYHSLAPMYYRGAQSAIVVYDITNQDTF 513
WDTAGQE+ L YY Q I+++D+T++ T+
Sbjct: 63 WDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITY 97
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 61.3 bits (142), Expect = 8e-11
Identities = 29/86 (33%), Positives = 49/86 (56%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
K+V+LG+ A GK+SL+ F KG F + E TI ++ I D +++ +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHD-IFVDGNSIELSLWDTAGQEE 73
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDT 510
Y L + Y ++ + + ++D+
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDS 99
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 61.3 bits (142), Expect = 8e-11
Identities = 28/93 (30%), Positives = 55/93 (59%)
Frame = +1
Query: 235 TKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWD 414
T + ++KLV++G+ VGKS+L ++ ++ F + + TI ++ + D ++ D
Sbjct: 4 TYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLD 62
Query: 415 TAGQERYHSLAPMYYRGAQSAIVVYDITNQDTF 513
TAGQE Y ++ Y R + ++VY+IT++ +F
Sbjct: 63 TAGQEEYSAMREQYMRTGEGFLLVYNITSRSSF 95
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 60.9 bits (141), Expect = 1e-10
Identities = 33/93 (35%), Positives = 52/93 (55%)
Frame = +1
Query: 232 QTKVCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIW 411
Q++ + KLV++G+ A GK+SL+ F G F T+ +++ R D +V+ +W
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDC-RVDGKSVQLALW 61
Query: 412 DTAGQERYHSLAPMYYRGAQSAIVVYDITNQDT 510
DTAGQE Y L PM Y A +V + I + D+
Sbjct: 62 DTAGQEEYERLRPMSYAKAHIILVGFAIDSPDS 94
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 58.8 bits (136), Expect = 4e-10
Identities = 28/86 (32%), Positives = 48/86 (55%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
KLV++G+ A GK+ L++ F KG F E T+ ++ + D V+ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHVELALWDTAGQED 66
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDT 510
Y L P+ Y + ++ + + + D+
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDS 92
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 57.2 bits (132), Expect = 1e-09
Identities = 26/81 (32%), Positives = 45/81 (55%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
KLV++G+ A GK+ L++ F KG F E T+ ++ + D ++ +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVAD-VEVDGRHIELALWDTAGQED 66
Query: 433 YHSLAPMYYRGAQSAIVVYDI 495
Y L P+ Y + ++ + +
Sbjct: 67 YDRLRPLSYPDSHVVLICFSV 87
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 54.8 bits (126), Expect = 7e-09
Identities = 30/87 (34%), Positives = 49/87 (56%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
++ +LG +VGKSSL +++V+ F E TI F ++ I++ EI DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDTF 513
Y L + G ++VY IT++ +F
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSF 93
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 51.6 bits (118), Expect = 7e-08
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTV-KFEIWDTAGQE 429
KLV++G+ GK+ L++ F G F E T+ ++T ++ V + +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 430 RYHSLAPMYYRGAQSAIVVYDI 495
Y L P+ Y + ++ + I
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSI 97
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 45.6 bits (103), Expect = 4e-06
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQER 432
K V++G+ AVGK+ L++ + +F T+ + + D ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 433 YHSLAPMYYRGAQSAIVVYDITNQDTF 513
Y L P+ Y +V + +T+ +F
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVTSPASF 90
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 39.1 bits (87), Expect = 4e-04
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +1
Query: 247 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 426
+ ++++LG A GK++++ + Q T+G F + + + + +KF +WD GQ
Sbjct: 21 EMRILMLGLDAAGKTTILYKLKLNQ-SVVTIPTVG--FNVETVTYKN--IKFNVWDVGGQ 75
Query: 427 ERYHSLAPMYYRGAQSAIVVYD 492
++ L Y+ G + I V D
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVD 97
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 37.9 bits (84), Expect = 9e-04
Identities = 20/87 (22%), Positives = 45/87 (51%)
Frame = +1
Query: 247 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 426
+ +++++G A GK++++ + G+ TIG F + + + + + F +WD GQ
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYRN--ISFTVWDVGGQ 71
Query: 427 ERYHSLAPMYYRGAQSAIVVYDITNQD 507
++ L Y++ Q I V D +++
Sbjct: 72 DKIRPLWRHYFQNTQGIIFVVDSNDRE 98
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 162 SYNNREGYGDKQDRSRTEAQWRSTDKSLPVQAG 260
S ++R+G GDK+ RS T++ W S KS+ +G
Sbjct: 7 SDDSRDGEGDKRLRSTTKSTWLSFLKSIATFSG 39
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 29.5 bits (63), Expect = 0.31
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +1
Query: 247 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTTVKFEIWDTAGQ 426
+ +++LLG GK++++ + +E T G T + ++F IWD GQ
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSP-TFGFQIRTLEVE----GLRFTIWDIGGQ 70
Query: 427 ERYHSLAPMYYRGAQSAIVVYD 492
+ + Y+ ++ I V D
Sbjct: 71 KTLRNFWKNYFESTEAIIWVVD 92
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 0.71
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Frame = +1
Query: 253 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ--AIRFDDTTVKFEIWDTAGQ 426
K++L+G S GKSS+ V + +GA + +RF V +WD GQ
Sbjct: 4 KVLLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 427 ERY-----HSLAPMYYRGAQSAIVVYDITNQD 507
E + + +R Q I V+D+ +++
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 317 PLTNRSTSEDLPTADSPNNTSLN 249
P N TS+DL DSPN + +N
Sbjct: 376 PSENSDTSDDLTKVDSPNKSLVN 398
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 2.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 256 LVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQAIRFDDTT----VKFEIWDTAG 423
+V+ GE+ GKS+ V++F+ + E + TQ R + V FE T G
Sbjct: 596 VVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVG 655
Query: 424 QERYHSL 444
+E +S+
Sbjct: 656 KEVGYSV 662
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 362 RNAAPMVLSWYSWNCPLT-NRSTSEDLPTADSPNNTSL 252
++ A V+ +W CPLT N +T + L ++P++ SL
Sbjct: 109 KSGAVRVIPPDNWKCPLTINTTTFKFLTRKNNPSSMSL 146
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 288 LAYRRLAQQHQLELADFCLWSAIGPLCGSGPVCRHIPPCYCSSVL 154
+A + Q +LE ++ W+ +G L R CY S+L
Sbjct: 914 VAINCIKQAIKLEAKNYVFWNMLGVLFSQTKAVRSAQHCYIQSLL 958
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 329 SWNCPLTNRSTSEDLPTADS 270
S N P N T EDLPT D+
Sbjct: 263 SENVPKPNAETQEDLPTIDA 282
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -1
Query: 219 GPLCGSGPVCRHIPPCYCSSVLNFFLGR 136
G + SG HI P Y S VLN +GR
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 413 SQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNTSLN 249
S +S+ T ++ +R A +N L++ S P ++ STS S N TS+N
Sbjct: 225 SSVSS-TYLTQDREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 284 PTADSPNNTSLNWQTFVCGAPLGLCAAPVLFVAIS 180
P+ +P +NW V GAP+ A +++ AIS
Sbjct: 486 PSVKNPTPAEMNWTCLVFGAPM---LAVLIWYAIS 517
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 416 VSQISNLTVVSSNRMAWVRNAAPMVLSWYSWNCPLTNRSTSEDLPTADSPNNT 258
+S L +S +A R VLS+ N P+ S+SE T + NN+
Sbjct: 65 LSSSKTLAELSKGELAKAREDLKSVLSFLKNNLPVDTESSSEAF-TIEKDNNS 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,149
Number of Sequences: 5004
Number of extensions: 44904
Number of successful extensions: 176
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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